PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 322aa    MW: 34526.5 Da    PI: 8.6149
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822220.34.1e-68141571145
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 
                     g+sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+  ++++ g+ ++ s++ss+
  Csa11g005010.1  14 GSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPPaAASDMSGTPTNLSTNSSI 108
                     689*************************************************************************99999************** PP

          DUF822  95 qsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                     q s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  Csa11g005010.1 109 QPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNHSS--YLLLPFLHNIAS 157
                     **********************************887..899999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.5E-6315141IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAGGIGGVG DGGGSSGRTP TWKERENNKK RERRRRAITA KIYSGLRAQG NYKLPKHCDN  60
NEVLKALCLE AGWIVEDDGT TYRKGFKPPA AASDMSGTPT NLSTNSSIQP SPQSSAFPSP  120
APSYHGSPVS SSFPSPSRYD GNHSSYLLLP FLHNIASSIP ANLPPLRISN SAPVTPPLSS  180
PTSRGSKRKL TSEQLLPNGG GSLHALRHPL FAISAPSSPT RRAGHQTPPT IPECDESEED  240
SIEDSGRWIN FQSTAPTSPT FNLVKQTSMV IDMKRSDWGM NGRGAEFEFE NGTVKPWEGE  300
MIHEVGVEDL ELTLGGTKTR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g005010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284125.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A430.0BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLR0H0R80.0R0H0R8_9BRAS; Uncharacterized protein
STRINGXP_010437306.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.18e-90BES1/BZR1 homolog 2