PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g003390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 285aa    MW: 31216.1 Da    PI: 11.137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g003390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-0968108332
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC............. CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkas...........k 32 
                     ++h+ +ErrRR riN  f++Lr++lP+++            
  Csa11g003390.1  68 KKHSDAERRRRLRINCQFATLRTILPNLVkvsaaaatsskL 108
                     68*************************98888775444440 PP
2HLH39.11.4e-12131177354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+ +ErrRR riN  f++Lr++lP++      K +Ka++L ++v+Y ++L
  Csa11g003390.1 131 KKHSDAERRRRLRINCQFATLRTILPNL-----VKHDKASVLGETVRYFNEL 177
                     68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-65695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.53765136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-768108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.83E-46895No hitNo description
Gene3DG3DSA:4.10.280.105.2E-76897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.771119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.977128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-9131182No hitNo description
SMARTSM003537.0E-12134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001206269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVLFHHLEQG MMPPISRCSK PTAYSTTMGR NVFFAGAAAA TSSKLFSRGF SATTKPKSKT  60
ESKEAAAKKH SDAERRRRLR INCQFATLRT ILPNLVKVSA AAATSSKLFS RGFSATTKPK  120
SKTESKEAAA KKHSDAERRR RLRINCQFAT LRTILPNLVK HDKASVLGET VRYFNELKKM  180
VQDIPTTPSL EDSLRLGHCN NNRDLARVVF SCSDREGLMS EVAESLKAAK TKAVRAEIMT  240
VGGRTKCALF VQGVNGNEGL VKLKKSLKPV VNGKSSSEAK KQQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g003390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087268.11e-132PREDICTED: transcription factor bHLH131-like
SwissprotP0CB251e-107BH131_ARATH; Transcription factor bHLH131
TrEMBLD7M9K51e-115D7M9K5_ARALL; Predicted protein
TrEMBLR0GUB71e-111R0GUB7_9BRAS; Uncharacterized protein
STRINGCagra.5414s0046.1.p1e-121(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.17e-75bHLH family protein