PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11332s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 118aa MW: 12694.1 Da PI: 6.956 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.5 | 6.3e-17 | 62 | 118 | 2 | 57 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenl 57 Wt++e+l+Lie +e++++++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l Csa11332s010.1 62 WTHDETLLLIESFKEKWDAIGRGPLKSNHWEEIAVAVsARSGVDRSATQCRHKIEKL 118 ***********************************998899**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51020 | 8.809 | 1 | 33 | IPR009465 | Spondin, N-terminal |
PROSITE profile | PS50090 | 6.829 | 62 | 118 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.5E-12 | 62 | 118 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
PTSSPPSDSN PNSAATPPDQ IQQQPSPPQP TDPSSPPPSH STVIALAATT SSVARKTQPV 60 LWTHDETLLL IESFKEKWDA IGRGPLKSNH WEEIAVAVSA RSGVDRSATQ CRHKIEKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11332s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010513803.1 | 1e-79 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A1J3CS39 | 2e-53 | A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment) | ||||
STRING | XP_010513803.1 | 5e-79 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 3e-44 | Trihelix family protein |