PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 176aa    MW: 20333.9 Da    PI: 4.9716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.33.1e-1991311118
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                     lp G+rF+P+d e+ v++L k++ g ++++  v +++ di++ +P+dLp           ++++e+++wyf+ +++k+       +++     W 
  Csa10g049630.1   9 LPIGMRFRPSDLEMAVYFLYKRAFGLQMNARIVPDNChDIFSRHPHDLPGetsflppllkEYEKEDEHWYFYREKSKSP------TKS--YNLWI 95 
                     699***************************77777889***********4489999999777778889***99987753......233..348** PP

             NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgek 118
                      tg+++evl+   +++lvg+k++++f +++++++ek
  Csa10g049630.1  96 PTGEETEVLDPkkNDKLVGIKHSFAFIENEEEESEK 131
                     *********98667778**********999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-216132IPR003441NAC domain
PROSITE profilePS5100521.0919157IPR003441NAC domain
PfamPF023652.4E-710125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGPVTYNDLP IGMRFRPSDL EMAVYFLYKR AFGLQMNARI VPDNCHDIFS RHPHDLPGET  60
SFLPPLLKEY EKEDEHWYFY REKSKSPTKS YNLWIPTGEE TEVLDPKKND KLVGIKHSFA  120
FIENEEEESE KNGLPDEEET PKYNCFSVTI TCSLRAHVSN HPSTLLNCAH IPPEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436049.15e-86PREDICTED: NAC domain-containing protein 104
TrEMBLR0F6W56e-53R0F6W5_9BRAS; Uncharacterized protein
STRINGXP_010436049.12e-85(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.17e-51NAC domain containing protein 95