PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g045080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 293aa MW: 33084.7 Da PI: 5.4181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g045080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.5e-16	35	83	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ +K +Ka+ L +++eYI+ Lq Csa10g045080.1 35 RSKHSETEQRRRSKINERFQSLMDIIPQN-----QKRDKASFLLEVIEYIHFLQ 83 899***********************9.....8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-20	31	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.22E-15	31	87	No hit	No description
PROSITE profile	PS50888	16.367	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-18	33	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-14	35	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MNSPDLDEQL EADMYSNLPS RNDSSTVRRN RSSGRSKHSE TEQRRRSKIN ERFQSLMDII 60 PQNQKRDKAS FLLEVIEYIH FLQEKVQLYE GSHQMWFQTP TKLIPWGNNL GSVVEVGDHP 120 QLGKSFSSNN EVAASSGFLL DMQNSVDSDI DPAVSTKILE HSPISAYVPT EPLPQFVQHD 180 FWQPNPSCGP ITCNTNELVN SEEKTSPSLS TVCSERVLHT LTEAFKSSGV NMSETVISVQ 240 LSLRKRADRE FSVTAFGSED KCDSIADQEG NSPTETRSYW KDLNHSEKRI RR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g045080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435794.1	0.0	PREDICTED: transcription factor BIM3-like isoform X1
Swissprot	Q9FMB6	1e-165	BIM3_ARATH; Transcription factor BIM3
TrEMBL	D7MJT9	1e-160	D7MJT9_ARALL; Uncharacterized protein
STRING	XP_010435794.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16131	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-167	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]