PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g033200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 31332.8 Da PI: 9.918 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 187 | 237 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r++lg+f tae+Aa a++ a+ l+ge Csa10g033200.1 187 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 237 59******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.72E-32 | 186 | 246 | No hit | No description |
PROSITE profile | PS51032 | 22.682 | 187 | 244 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 187 | 245 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-35 | 187 | 250 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-23 | 187 | 245 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-11 | 188 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-13 | 188 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 210 | 226 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MNMEDQFPKI ETSFMHDKLL SSGIYGILSS STQPQLLGVP IFLEGMKAPL LPPPSTPSYF 60 VSPHHELTSS SHQSPVASVP WNFLESFPQF DQRPDHPSKP PNLTLFLKEP KLLELSHSDS 120 NMIPYHKYIP NSLYQSDQTR NEWVEINKTL TNYPSKGFGN YWLSTTKTQP MKSKTRKVVQ 180 TTTPTKLYRG VRQRHWGKWV AEIRLPRNRT RVWLGTFETA EQAAMAYDTA AYILRGEFAH 240 LNFPDLKHQL KSGSLRCMIA SLLESKIQQI SAAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 186 | 244 | 4 | 63 | ATERF1 |
3gcc_A | 4e-21 | 186 | 244 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g033200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL035528 | 0.0 | AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project). | |||
GenBank | AL161537 | 0.0 | AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37. | |||
GenBank | BT029729 | 0.0 | BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440558.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 0.0 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | D7MHD9 | 1e-180 | D7MHD9_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010440558.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10799 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-174 | ERF family protein |