PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g024580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 127aa MW: 15190.6 Da PI: 10.6187 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 62.4 | 1.1e-19 | 12 | 101 | 2 | 98 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F +++y+++e+++ + +isw +++nsfv+++ eef ++ + + F ++f+ F L YgF+++k+ +++ e++h+ F +g+ e +++ Csa10g024580.1 12 FPMRIYNLVENPSSDPIISWGKDNNSFVIWNLEEFIRRYIVHKFDCNRFSKFHADLRHYGFRRIKKGSGE-------LEYRHEDFVRGQPERMKT 99 78899***************************************************************99.......*************99998 PP XX CS HSF_DNA-bind 97 ik 98 + Csa10g024580.1 100 MV 101 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-22 | 8 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-23 | 9 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.81E-23 | 10 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-19 | 12 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.7E-5 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.7E-5 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MAHNLLKGLS VFPMRIYNLV ENPSSDPIIS WGKDNNSFVI WNLEEFIRRY IVHKFDCNRF 60 SKFHADLRHY GFRRIKKGSG ELEYRHEDFV RGQPERMKTM VLKAWRKSRA KFEAKEAAEE 120 MRRLKI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g024580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434380.1 | 7e-90 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_010434381.1 | 7e-90 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | R0H2D4 | 3e-56 | R0H2D4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010434380.1 | 3e-89 | (Camelina sativa) | ||||
STRING | XP_010434381.1 | 3e-89 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 3e-38 | HSF family protein |