PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g022070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 133aa MW: 15419.7 Da PI: 5.1185 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 3e-11 | 36 | 79 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++ ++ Lr+++P + ++Ka+i+e A+ YI +Lq Csa10g022070.1 36 EAERRRRQKLHVRLMALRSHVPIV-----TNMTKASIVEDAITYIGELQ 79 79*********************8.....69****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-15 | 26 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.44E-10 | 27 | 83 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-13 | 28 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.113 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-12 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 36 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGGGSIFQEP DRMKRRRQVT EENMEEDESF KSPNLEAERR RRQKLHVRLM ALRSHVPIVT 60 NMTKASIVED AITYIGELQK NVQNLSEKLF EMEEAPPEID DVEQTDQTMI KPKLETIHLK 120 EEMKKLGIEV LN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g022070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF104533 | 7e-73 | EF104533.1 Capsella rubella clone E30_26 genomic sequence. | |||
GenBank | HQ379632 | 7e-73 | HQ379632.1 Capsella rubella S-locus region genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434191.1 | 5e-89 | PREDICTED: transcription factor DYT1-like | ||||
Refseq | XP_010436464.1 | 2e-89 | PREDICTED: transcription factor DYT1-like, partial | ||||
Swissprot | O81900 | 2e-63 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A330PHW2 | 1e-69 | A0A330PHW2_9BRAS; At421330-like protein | ||||
STRING | XP_010434191.1 | 2e-88 | (Camelina sativa) | ||||
STRING | XP_010436464.1 | 7e-89 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8358 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 8e-66 | bHLH family protein |