PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g022050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 306aa MW: 34580.2 Da PI: 4.8189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g022050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	199	234	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L++l + +K + a++L+ A+eYIk Lq Csa10g022050.1 199 KLGDRITALQQLASPF-----GKTDTASVLQDAIEYIKFLQ 234 5555666666655554.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.17	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-10	194	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.76E-7	194	237	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-8	198	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTEEFDTARF CTGAWWSSSN SIFPGCSLPR SAEVVVDSGR YEWQNIDTLN AKTYNENYLD 60 TSTFLGSAIT DSTSQTYVSS QYNLHGEERF GTINSFLEGL FDSNEQLLVP NCPKPELFES 120 FHFFDDVFLD ESRMVSVFDH EIKDKPKDDN MQSCKSLVTC KRASEKTEEH EDIESSQPLK 180 RPRLETPSHF PSFKVRKEKL GDRITALQQL ASPFGKTDTA SVLQDAIEYI KFLQEQIIEK 240 VSSDPHLNSR GSGEQKQWSG KSSNSTHDQG CSPRQDLRSR GLCLMPISST FSTPSQHLDT 300 SSFWN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g022050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065362	0.0	AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBank	AY122937	0.0	AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010434190.1	0.0	PREDICTED: transcription factor bHLH103-like
Swissprot	Q8VZ22	0.0	BH103_ARATH; Transcription factor bHLH103
TrEMBL	G4WH97	0.0	G4WH97_ARALY; Uncharacterized protein
STRING	XP_010434190.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	0.0	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]