PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g021170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 360aa    MW: 38108.3 Da    PI: 8.1322
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g021170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31117175259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Csa10g021170.1 117 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 175
                     7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33101177IPR003657WRKY domain
SuperFamilySSF1182901.31E-27109177IPR003657WRKY domain
PROSITE profilePS5081128.908111177IPR003657WRKY domain
SMARTSM007741.6E-35116176IPR003657WRKY domain
PfamPF031061.4E-26118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVPRQFMDLG PSSGATEHEA EVSSEERTMI HSGSPPSLLE SSNLRENGKR LLGREESPEE  60
SESNAWGNPN KVPKHNSSSS NNNNNGNGNV IDQSAAEATM RKARVSVRAR SEAPMISDGC  120
QWRKYGQKMA KGNPCPRAYY RCTMAGACPV RKQVQRCAED RSILITTYEG NHNHPLPPAA  180
MAMASTTTAA ASMLLSGSMS SQDGLMNPTN LLARAILPCS SSMATISASA PFPTITLDLT  240
NSPNGNNPNM TTNNPLMQFA QRPGFNPAVL PQVVGQALYY NQQQSKFSGL QLPAQPLQIP  300
ATSSVSESVS AASAAIASDP NFAAALAAAI TSIMNGSSHQ NNNTNNNNNV ATSNGDNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23103179176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g021170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434087.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ93WT01e-177WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGXP_010434087.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-160WRKY DNA-binding protein 31