PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g018370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 226aa MW: 24387.2 Da PI: 8.0774

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g018370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.2	9.8e-34	47	101	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eClkNhA+++GghavDGC+Efmps ge+gt +alkCaACgCHRnFHR+e+e Csa10g018370.1 47 KMRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGTLDALKCAACGCHRNFHRKETE 101 789***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-26	48	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-30	48	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-29	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.366	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.4E-32	149	224	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-19	150	223	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-27	163	219	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNFEEQEEDM EMSGANPPGG YDSLSGEGAT SSGGGGGGGR NKGVGGKMRY RECLKNHAVN 60 IGGHAVDGCC EFMPSGEDGT LDALKCAACG CHRNFHRKET EIIGGRAHRV PTYYNRPPQP 120 HPPPGYLHLA SPVATGQPYR PPVGSADEED TSNPSSSGGT TAKRFRTKFT AEQKEKMLAF 180 AERLGWRIQK HDDVAVEQFC AETGVRRQVL KIWMHNNKNS LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-37	161	220	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g018370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF439841	0.0	AF439841.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds.
GenBank	AL035356	0.0	AL035356.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project).
GenBank	AL161561	0.0	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	AY125563	0.0	AY125563.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010433740.1	1e-169	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	1e-127	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	D7MGP1	1e-132	D7MGP1_ARALL; ATHB22/MEE68
TrEMBL	R0FAW7	1e-132	R0FAW7_9BRAS; Uncharacterized protein
STRING	XP_010433740.1	1e-168	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-110	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]