PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g017560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25354.7 Da PI: 9.3303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 44 | 93 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K ++ + Av++Ik+ Csa10g017560.1 44 KLLHRDIERQRRQEMATLFAALRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 93 6679************************66...9999999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.36E-12 | 39 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.69E-9 | 40 | 93 | No hit | No description |
PROSITE profile | PS50888 | 11.839 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-8 | 44 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDPYQNPNPK GYQRQRPFSS AGKGGSSGDS GMPHETDDNK KQKKLLHRDI ERQRRQEMAT 60 LFAALRTHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LRARRDELSK ETGQKYQSNP 120 DPARTESDLP KSDPATVMVQ PHVSGLEVVV SSNSSGPEAL LLSRVLETLQ EKGLEVVSSL 180 TTRVNERLMH TIQVEVNSFG CVDLAWLQEK LVEDLIVSTG KYLKSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g017560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493700 | 0.0 | AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433644.1 | 1e-168 | PREDICTED: transcription factor bHLH126-like isoform X1 | ||||
Swissprot | Q9STJ6 | 1e-126 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | D7MG08 | 1e-124 | D7MG08_ARALL; Basix helix-loop-helix family protein | ||||
STRING | XP_010433644.1 | 1e-167 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-129 | bHLH family protein |