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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa10g013770.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | bHLH | ||||||||
| Protein Properties | Length: 1008aa MW: 110868 Da PI: 7.7368 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.4 | 2.2e-12 | 269 | 316 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++hn E+ RR++iN+++ +L+el+P + K + a++L ++eY+ks q
Csa10g013770.1 269 EMHNLSEKIRREKINEKLKTLQELIPGC-----SKKDTASTLDSVIEYVKSVQ 316
58*************************9.....57888************987 PP
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| 2 | HLH | 35.7 | 1.6e-11 | 805 | 851 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++hn +Er+RR++iN++++ L+el+P + +K + a++Le +++++k+L
Csa10g013770.1 805 EMHNLAERKRREKINEKMNALQELIPGS-----RKSDRASMLEDVIQFVKKL 851
58************************98.....8***************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.57E-15 | 264 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 16.069 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.13E-12 | 269 | 320 | No hit | No description |
| Pfam | PF00010 | 4.8E-10 | 269 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.0E-16 | 270 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.7E-12 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.77E-13 | 795 | 856 | No hit | No description |
| PROSITE profile | PS50888 | 16.59 | 802 | 851 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.7E-9 | 805 | 851 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 6.67E-15 | 805 | 871 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.9E-15 | 806 | 867 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.6E-14 | 808 | 857 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1008 aa Download sequence Send to blast |
MFMQLDKYMI LGFVVLFEIR GEDDIVELLW KSGQVVPSSQ QTQRPSSGPL PILRGSGSGE 60 GNAPLPQPPP PLHHHLFNQE DEMASWLHHP NRQDYFYSGV SMTPATLPQR SSASMALPPP 120 SSQYIMTPER PTGQVLAVRR AENFMKYFSS LIGIIFTGGR DEPGPSMQMS SSATPSSFAI 180 GSCVIPATAE GTKSRVSPTF AVPSRRNEKV AIETTFCETI AETKPIQIQP ATEIAEDRKQ 240 KGREETNAEI QGTQEARGSH SRKRSRAAEM HNLSEKIRRE KINEKLKTLQ ELIPGCSKKD 300 TASTLDSVIE YVKSVQMKEQ MKSMEQGMMP PMMSAENTPQ VMPHMRMNMN RPPPLIPFSG 360 TPFPRPPHMA GVGRPSSCPA PRYPTDPSRV HLRSPQPNPV SNQPQFPTYM NPYSQFVGLH 420 QMQQPPSSLH SQTTSHYFSH ASSSKEPDDQ GNQSTDLVSL RLKVGRGEDD LLELVWKSGQ 480 VVQRSHTQRP SSPPPPRPCP PTILRGSGSG GGGGGEENVS LQLPQPEPQP YMHHQNLFIQ 540 EDEMASWLYH SYHQDYFCSE LLYPGVASTH ATHPQSSVSL APSPSAPYIL PPERPIGHNL 600 PVTRVENLMN FSWLRRNIYT SGRVEVGQSI PVQVGSSATT SSSVTLPQTL ASLAQPAPSA 660 QYILTENRPT GQVSTNFSRL RGNMFTGGRV EAGPSMEVGS SATPSSSAIE SCVLPATEGT 720 GSRVSHTFAV PGLDRNGKAV AIETARTPTS GVCKAETEPI QVQPATEMGI AEDRKRKERE 780 ETVAGFQGTE EARVSKSRKR SRAAEMHNLA ERKRREKINE KMNALQELIP GSRKSDRASM 840 LEDVIQFVKK LHSQIQDYIC LHDMTENLIS ESMLLCQMIS RGQGTMPPVT NAGNMQQFMP 900 QMGMGMMGMN RPPFIPSPMP PHIADPPYPA PHHPFPNIQT SDPSTVHLPT PQPQFPAYMN 960 PYSQFLGPHQ MQQPPPPPSQ SQTTSQLSVS QASTSKELED QDNQPTG* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 797 | 814 | RKRSRAAEMHNLAERKRR |
| 2 | 810 | 815 | ERKRRE |
| 3 | 811 | 816 | RKRREK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa10g013770.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010436355.2 | 0.0 | PREDICTED: transcription factor bHLH119-like | ||||
| Swissprot | Q9SVU7 | 1e-138 | BH056_ARATH; Putative transcription factor bHLH056 | ||||
| TrEMBL | D7MD82 | 0.0 | D7MD82_ARALL; Uncharacterized protein | ||||
| STRING | XP_010436356.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9041 | 16 | 35 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28800.1 | 2e-97 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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