PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g012640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 200aa    MW: 23093.7 Da    PI: 4.2624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g012640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-115799754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr+++P+      +Kl+Ka++ +  ++Y+++L
  Csa10g012640.1 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 99
                    57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0445099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-105399No hitNo description
SuperFamilySSF474591.83E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1656117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDLEQEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASVIK DSIDYMQELI EQEKKLEAEI RELESRSVLL  120
ENPMKDYDCV NNISEIQLQN FPDRNVMRSK KFKQTDYSTR VQYSPIEVLE ADEEESSAVE  180
AKIQMAIAAY NDPNYLINF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g012640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177301e-140AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762011e-140AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762761e-140AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK2282011e-140AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058691e-140BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436337.11e-122PREDICTED: transcription factor bHLH27-like, partial
SwissprotQ700E31e-106BH027_ARATH; Transcription factor bHLH27
TrEMBLR0F7Y51e-106R0F7Y5_9BRAS; Uncharacterized protein
STRINGXP_010436337.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.42e-89bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]