PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 296aa    MW: 33176.8 Da    PI: 8.4828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-1615100297
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     fk l     + s  l++p kf++ +  g +  e+ t  l++  s  sW+v++  ++++    lt GWkeF+ a++L++gD++vF++dg s f  +
  Csa10g010880.1  15 FKPL--LPGFDSF-LTIPVKFFSVYlhGRN--EGNTAELRSdASEISWKVEM--EGRK----LTVGWKEFATAHDLRVGDVIVFRHDGASVF--H 96 
                     5555..4455555.9*******99975545..5557777775899*******..8888....************************999999..8 PP

                     EEEE CS
              B3  94 vkvf 97 
                     v+ f
  Csa10g010880.1  97 VTCF 100
                     8776 PP
2B364.22e-20187285198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f++ + ++++lk+grl lpk+f++ + +kk ++k++t+ d++g++W v+l ++++  ++ l+ G keF kang+k+ +++vF+++++ +++ + +
  Csa10g010880.1 187 FVTRTATPSSLKKGRLHLPKNFVKVNRMKKLGGKKITVLDKHGKEWPVNLVMERGNTHMRLGLGLKEFFKANGIKAHESLVFEFVWEdKTTLPIL 281
                     667788999*****************999*********************99999999***************************9977777888 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++++
  Csa10g010880.1 282 QICS 285
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-229109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2811103IPR003340B3 DNA binding domain
CDDcd100173.34E-1912100No hitNo description
SMARTSM010193.4E-2314103IPR003340B3 DNA binding domain
PfamPF023621.2E-102597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-18180281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19185281IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-20187285IPR003340B3 DNA binding domain
SMARTSM010191.0E-21187287IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887187286IPR003340B3 DNA binding domain
CDDcd100172.64E-17193274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MANPVLGSPT NPHFFKPLLP GFDSFLTIPV KFFSVYLHGR NEGNTAELRS DASEISWKVE  60
MEGRKLTVGW KEFATAHDLR VGDVIVFRHD GASVFHVTCF GPSCCEIQYV QSCDDDNNLD  120
DDQENIRNLS MKQSLKTEPE SSLDEDKDYM ELKSVSTKDC NKRKRNKSGD SSQKVPSSSS  180
SGSEGRFVTR TATPSSLKKG RLHLPKNFVK VNRMKKLGGK KITVLDKHGK EWPVNLVMER  240
GNTHMRLGLG LKEFFKANGI KAHESLVFEF VWEDKTTLPI LQICSNLPCY SELVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g010880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477477.10.0PREDICTED: B3 domain-containing protein REM7-like
SwissprotQ8H2D05e-77REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A087GIQ61e-92A0A087GIQ6_ARAAL; Uncharacterized protein
STRINGXP_010432838.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.13e-77B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]