PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g010790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 863aa MW: 98079.2 Da PI: 9.1137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.1e-18 | 22 | 97 | 11 | 94 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++++ l++p f+++h ggk +e+kt +l++ +s ++W vk+ ++++ lt+GWkeFvka++L+ gD+++Fk++g++ f +v Csa10g010790.1 22 SETH-LTIPVVFFSKHiGGK-HEQKTAKLKSdSSEKTWVVKM--DGRR----LTQGWKEFVKAHDLRIGDIIIFKHEGDMVF--RV 97 4444.9**********6555.5678****996777*******..9998....***********************9999888..44 PP | |||||||
2 | B3 | 68 | 1.3e-21 | 159 | 254 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +++++lk++ + lpkk a++ ++ +++ ++l +e+g+sW+++l++r ++g+y++++GWk+F+++n+ kegD + F l+g+ e ++++ ++ Csa10g010790.1 159 VANVTASNLKTDTINLPKKAASSKALSRRCD-NIILVNEEGNSWTLNLRFRESDGSYYMGGGWKRFCSENRQKEGDLIAFNLVGDGESNPMLCIC 252 5678999**************9999997776.*****************************************************9999****99 PP -S CS B3 98 rk 99 ++ Csa10g010790.1 253 QE 254 86 PP | |||||||
3 | B3 | 37.6 | 4e-12 | 289 | 370 | 1 | 82 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvF 82 f++ ++s++ k++ l+lp +f++ +g +++++k+++led++g + +kli ++++ l+kGWk F++an++ + v+F Csa10g010790.1 289 FVTLSLTSYNIKNSKLSLPVEFTKING-INNNHKKIILEDKHGVKRLIKLIRdgpNNGR--RGLGKGWKLFCRANDVLKNIPVTF 370 6778899****************6555.557889****************998544444..45*************987766655 PP | |||||||
4 | B3 | 40 | 6.9e-13 | 366 | 436 | 18 | 95 |
--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ +h g++k+e t +l++ s +We+k+ + ++ r l GWkeFv a++L+ gD++vF+++g +f ++v+ Csa10g010790.1 366 IPVTFFLKHlqGINKQE--TAKLRTdVSDTVWELKI--EDGR-R--LN-GWKEFVTAHDLRIGDVIVFRHEG--DFVFHVT 436 99***99**97666655..5555554999*******..5554.3..56.********************766..5644665 PP | |||||||
5 | B3 | 47.3 | 3.8e-15 | 495 | 573 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +fa+++g k+++ +++l +e grsW++ l ++k++ +++l+ GW++F++ang++ g +Fkl++ +++ +v+++++ Csa10g010790.1 495 YVPVSFARSNGWTKACG-KVVLLNEMGRSWNLSLDHDKSGIKTYLRHGWRSFCNANGMNRGGH-TFKLVQ-NSGMPVIRLCQ 573 79********9999998.****************999*9999*****************9985.999998.67779999987 PP | |||||||
6 | B3 | 69.6 | 4.1e-22 | 627 | 711 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + +lpk f++++g++ke+ +++l++e gr+W++ l++rk+ +++v+++GW++F++ ngLk++D++ Fkl++ +++++v+ ++ Csa10g010790.1 627 LMLQYLPKGFVSSNGLNKECCDEMVLKNEYGRTWNLVLRHRKSNNTVVMSRGWRSFCQVNGLKARDSFRFKLVR-TGAKPVLCLCP 711 55569******************************************************************998.88889999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-21 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.76 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.81E-17 | 12 | 100 | No hit | No description |
SMART | SM01019 | 5.0E-24 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 23 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-19 | 148 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-18 | 156 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.77E-17 | 157 | 252 | No hit | No description |
PROSITE profile | PS50863 | 14.649 | 157 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-23 | 158 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-19 | 159 | 254 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-12 | 283 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-12 | 284 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-11 | 288 | 372 | No hit | No description |
SMART | SM01019 | 4.3E-15 | 289 | 381 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-11 | 289 | 371 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.391 | 289 | 389 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-15 | 366 | 452 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-14 | 366 | 448 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.22 | 383 | 441 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.404 | 395 | 441 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-13 | 491 | 575 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.03E-12 | 495 | 572 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-13 | 495 | 576 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-13 | 495 | 574 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-13 | 495 | 579 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.475 | 496 | 575 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-19 | 582 | 711 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 615 | 713 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-22 | 624 | 713 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-21 | 625 | 712 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 630 | 716 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-18 | 631 | 711 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MLNSPLQSPT NPHFFQPLLP GSETHLTIPV VFFSKHIGGK HEQKTAKLKS DSSEKTWVVK 60 MDGRRLTQGW KEFVKAHDLR IGDIIIFKHE GDMVFRVTPF GPSCCEIQYA QCNIKMEDDN 120 DDEEDDMENQ HSTRNGLRKT KLNPKTEAES FESCDYCFVA NVTASNLKTD TINLPKKAAS 180 SKALSRRCDN IILVNEEGNS WTLNLRFRES DGSYYMGGGW KRFCSENRQK EGDLIAFNLV 240 GDGESNPMLC ICQEEVCSEL MSIAREKIKT KKRRRRWVAS PSSPEQNRFV TLSLTSYNIK 300 NSKLSLPVEF TKINGINNNH KKIILEDKHG VKRLIKLIRD GPNNGRRGLG KGWKLFCRAN 360 DVLKNIPVTF FLKHLQGINK QETAKLRTDV SDTVWELKIE DGRRLNGWKE FVTAHDLRIG 420 DVIVFRHEGD FVFHVTALGL NCCETEYSTS SHSIDDDCDN HQDNIEIRPM KKRVKKNPRR 480 EEDSSSEHSC FVANYVPVSF ARSNGWTKAC GKVVLLNEMG RSWNLSLDHD KSGIKTYLRH 540 GWRSFCNANG MNRGGHTFKL VQNSGMPVIR LCQAGCKPDA ESSSSDCSYF AGSLTPSSFN 600 KDALVSANFY CKDDLTELVD DLWMFNLMLQ YLPKGFVSSN GLNKECCDEM VLKNEYGRTW 660 NLVLRHRKSN NTVVMSRGWR SFCQVNGLKA RDSFRFKLVR TGAKPVLCLC PAETKRDTRV 720 VECSKGTDVD SLSTDPSSGE ESSETEESEV KKNIKDNGRD NSNFKEDSEE ESIEENIKKE 780 KYCSRRGASS SSSQSRFVTL TITPYSYRSN KLRLPLHFTR VNGIEKPGKI TVGSRRSKSD 840 GASCKRPRKR KIETRKRLER IL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 275 | KKRRRR |
2 | 844 | 850 | KRPRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g010790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438003.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | A0A3P6BQN0 | 0.0 | A0A3P6BQN0_BRACM; Uncharacterized protein | ||||
STRING | Bo3g173740.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-101 | B3 family protein |