PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g003360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 554aa MW: 60753.9 Da PI: 9.2878

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g003360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.7e-25	232	275	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Csa10g003360.1 232 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 275 79***************************************998 PP
2	QLQ	53.3	8.3e-19	168	204	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll i+k Csa10g003360.1 168 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKK 204 59******************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-11	168	204	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.381	169	204	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.7E-13	169	202	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.77	232	276	IPR014977	WRC domain
Pfam	PF08879	3.6E-21	233	275	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MDIGVHILGS VTSNETPGQK QELRGTKQDR SGFNGDDYYL QRSLKLARTT TTREEEEDNL 60 SSSSSFAASY CKTIPFHQGI PLLRSASPLS SSDSRRQEQM LSFSDKPQAL DFTKYVGLDN 120 NCHNKSSLSP FLHQIPPPSY FRNSGGGYGS GGMMMNMSMQ GNFTSVKGPF TLTQWAELEQ 180 QALIYKYITA NVPVPSSLLI SIKKSFYPFG SLPPSSFGWG TFHLGFAGGN MDPEPGRCRR 240 TDGKKWRCSR DAVPDQKYCE RHINRGRHRS RKPVEVQSGQ TATATAASKA VTTTPQQPVA 300 AGNSNNRRAS NSNRSLAIGG GQYINPSTES LPNNNRVRNP QIYPSTVNLQ PKESPVIHQK 360 QRNNNNNNNP FEFGHISSDS LLNPNADTSK TYGSSYLDFS SNQDKYSGNH NHNSWPEELK 420 SDWTQLSMSM PIASSSSPSS SHNNNNNAQE KTTLSPLRLS REIDLSIQTE ETTMEPAAKK 480 VNTWIPISWG NSLGGPLGEV LNSTTNSPTL GSSPTGVLQK STFCSLSNNS SVSSPIAENN 540 NRNNGDYFHY TTT*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MDIGVHILGS VTSNETPGQK QELRGTKQDR SGFNGDDYYL QRSLKLARTT TTREEEEDNL  60
SSSSSFAASY CKTIPFHQGI PLLRSASPLS SSDSRRQEQM LSFSDKPQAL DFTKYVGLDN  120
NCHNKSSLSP FLHQIPPPSY FRNSGGGYGS GGMMMNMSMQ GNFTSVKGPF TLTQWAELEQ  180
QALIYKYITA NVPVPSSLLI SIKKSFYPFG SLPPSSFGWG TFHLGFAGGN MDPEPGRCRR  240
TDGKKWRCSR DAVPDQKYCE RHINRGRHRS RKPVEVQSGQ TATATAASKA VTTTPQQPVA  300
AGNSNNRRAS NSNRSLAIGG GQYINPSTES LPNNNRVRNP QIYPSTVNLQ PKESPVIHQK  360
QRNNNNNNNP FEFGHISSDS LLNPNADTSK TYGSSYLDFS SNQDKYSGNH NHNSWPEELK  420
SDWTQLSMSM PIASSSSPSS SHNNNNNAQE KTTLSPLRLS REIDLSIQTE ETTMEPAAKK  480
VNTWIPISWG NSLGGPLGEV LNSTTNSPTL GSSPTGVLQK STFCSLSNNS SVSSPIAENN  540
NRNNGDYFHY TTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g003360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493726	0.0	AB493726.1 Arabidopsis thaliana At4g37740 mRNA for hypothetical protein, partial cds, clone: RAAt4g37740.
GenBank	AK176432	0.0	AK176432.1 Arabidopsis thaliana mRNA for transcription activator (GRL2), complete cds, clone: RAFL24-18-E23.
GenBank	AY102635	0.0	AY102635.1 Arabidopsis thaliana transcription activator (GRF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432035.1	0.0	PREDICTED: growth-regulating factor 2-like
Swissprot	Q8L8A8	0.0	GRF2_ARATH; Growth-regulating factor 2
TrEMBL	A0A178UXW8	0.0	A0A178UXW8_ARATH; GRF2
STRING	XP_010432035.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	0.0	growth-regulating factor 2

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]