PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g003040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24173 Da PI: 10.781 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 68 | 114 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN f++Lr++lP++ K +Ka++L ++v+Y ++L Csa10g003040.1 68 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 114 68*************************9.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-13 | 56 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.008 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-13 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.30E-10 | 68 | 119 | No hit | No description |
SMART | SM00353 | 4.6E-12 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MVLLHHLEQG MMPPIARCYK PTAYSTTMGR NVFFAGAAAA TSSKLFSRGF SATTKPKSKT 60 ESKEAAAKKH SDAERRRRLR INCQFATLRT ILPNLVKQDK ASVLGETVRY FNELKKMVQD 120 IPTTPSLEDS LRLGHCNNNR DLARVVFSCS DREGLMSEVA ESLKAAKTKA VRAEVTVGGR 180 TKCALFVQGV NGNEGLVKLK KSLKPVVNGK SSSEAKKQQQ * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g003040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ577587 | 0.0 | AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019087268.1 | 1e-136 | PREDICTED: transcription factor bHLH131-like | ||||
Swissprot | P0CB25 | 1e-121 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | D7M9K5 | 1e-131 | D7M9K5_ARALL; Predicted protein | ||||
TrEMBL | R0GUB7 | 1e-123 | R0GUB7_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25542s0212.1.p | 1e-133 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13939 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38070.1 | 9e-98 | bHLH family protein |