PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g001150.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 692aa MW: 77275.7 Da PI: 7.2955

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g001150.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.9e-29	424	474	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa10g001150.1 424 ENDITLETLKQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 474 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	410	494	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-26	427	474	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.0E-20	595	682	No hit	No description
SuperFamily	SSF54277	2.13E-20	596	685	No hit	No description
SMART	SM00666	7.1E-23	598	683	IPR000270	PB1 domain
PROSITE profile	PS51745	23.546	598	683	IPR000270	PB1 domain
Pfam	PF00564	2.3E-18	599	682	IPR000270	PB1 domain
CDD	cd06407	2.19E-39	599	682	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MEESNNSGVV DFPENFMDEL LWEECWDEEN EVASSSGLKE RVTCAMRHLQ EVMGERELLI 60 QLWVPVERRS GRVLSTEDQP YSLNPFSQSQ SLALYRDASA GYSFAAEVGS DQLVGLPGRV 120 FLRRMPEWTP DVRFLSSEEY PRIGYARRYQ VRASLALPLF QGASGNCVAV MEMVTTRRSL 180 EYASQIHTIC HALEAFDLRT SQTSSIIPAA SLKPHTVDLH TEVASILQGI CSWHGLPLAI 240 TWGHQDSSTL SALISACYAS NQDSRCFLAA CSEHHLLGGQ GIAGRAFATK KQCFETDVAI 300 FSKWSYPLSH YAKMLDLHAA LAVPLLTRRN RTVQFVLEFF FPRDCLDIQT QRLTLVSQLN 360 QRFQSSPHLM VDDQLAEDVR DTATPLTDHS SRSAQEEATD PKGKSLSFYS SSSMESRKRK 420 TRAENDITLE TLKQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK 480 LQVVMDSVEG VQGSLHLASF YSSFPQLQSS SFPLINPTQT VHVPPKSPPS LSGSQSSSGS 540 STCCSSEEQQ LGGFQKPALS HPQLLTLSSL QEDQRPARVT SSLPPLPSAT ASRKAKDGMK 600 VKAMFRDSML RMCLQPHSRL TDLRREIAKR FGMDDVLTSN FSLKYMDDDQ EWVLLTCDAD 660 LEECIQVYKS SLEKTIRILV HHPLSRPSFE S*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MEESNNSGVV DFPENFMDEL LWEECWDEEN EVASSSGLKE RVTCAMRHLQ EVMGERELLI  60
QLWVPVERRS GRVLSTEDQP YSLNPFSQSQ SLALYRDASA GYSFAAEVGS DQLVGLPGRV  120
FLRRMPEWTP DVRFLSSEEY PRIGYARRYQ VRASLALPLF QGASGNCVAV MEMVTTRRSL  180
EYASQIHTIC HALEAFDLRT SQTSSIIPAA SLKPHTVDLH TEVASILQGI CSWHGLPLAI  240
TWGHQDSSTL SALISACYAS NQDSRCFLAA CSEHHLLGGQ GIAGRAFATK KQCFETDVAI  300
FSKWSYPLSH YAKMLDLHAA LAVPLLTRRN RTVQFVLEFF FPRDCLDIQT QRLTLVSQLN  360
QRFQSSPHLM VDDQLAEDVR DTATPLTDHS SRSAQEEATD PKGKSLSFYS SSSMESRKRK  420
TRAENDITLE TLKQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK  480
LQVVMDSVEG VQGSLHLASF YSSFPQLQSS SFPLINPTQT VHVPPKSPPS LSGSQSSSGS  540
STCCSSEEQQ LGGFQKPALS HPQLLTLSSL QEDQRPARVT SSLPPLPSAT ASRKAKDGMK  600
VKAMFRDSML RMCLQPHSRL TDLRREIAKR FGMDDVLTSN FSLKYMDDDQ EWVLLTCDAD  660
LEECIQVYKS SLEKTIRILV HHPLSRPSFE S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	420	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g001150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	0.0	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	0.0	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431765.1	0.0	PREDICTED: protein NLP3-like
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	R0F7T3	0.0	R0F7T3_9BRAS; Uncharacterized protein
STRING	XP_010431765.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]