PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g090090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24017.9 Da    PI: 9.8507
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g090090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-222062345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+  k
  Csa09g090090.1 20 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 62
                    8999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.5911070IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-301069IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-281190IPR002100Transcription factor, MADS-box
CDDcd002652.14E-341186No hitNo description
PRINTSPR004044.4E-171232IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251966IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMMSKKKETI GRQKIPMVKI KKESHRQVTF SKRRAGLFKK ASELCTLCGA EIGIIVFSPA  60
KKPFSFGHPS VESVLDRYLS RNNISLAQTQ QPQGNPVAGC ELNMQLTQIL SEVEDEKKKG  120
QAMEEIRKAS VRRSVINWWE KPVEEMNMFQ LQEMKHALEE LRKTVVTNMA SFSEVKEDVF  180
GFLDNKVTAP PYMNMSAGLS SIYNFANGNG CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-151082173MEF2C
5f28_B2e-151082173MEF2C
5f28_C2e-151082173MEF2C
5f28_D2e-151082173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g090090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065850.0AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565420.0DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds.
GenBankEU8366910.0EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429480.11e-158PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-136AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLD7LJG11e-140D7LJG1_ARALL; Predicted protein
STRINGXP_010429480.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-138AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]