PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g088420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28083.6 Da PI: 8.974 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 150 | 195 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Csa09g088420.1 150 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 195 99***********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.77E-14 | 143 | 199 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-17 | 143 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.409 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-17 | 147 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 150 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-14 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMNSSLLTPS SSSSHIQTPA TTTFDHEDFL DQIFSSAPWP SVVDDAHPPL PSDSFHGHDV 60 DSRNQQIMMM PLNDGSSVHA LYNGFSASGS LPNFHIPHGS GGGLMNQERQ TQTPSQPQAS 120 ASTATGGTVA APLQSRTKVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNGNKTDK 180 ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA SVSSQISEVF QFTISTLFFF LFSFFVISNK 240 HFRQWIKLRN YTVN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 159 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g088420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176370 | 0.0 | AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21. | |||
GenBank | AK176390 | 0.0 | AK176390.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-10-C06. | |||
GenBank | BT026512 | 0.0 | BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429396.1 | 1e-160 | PREDICTED: transcription factor bHLH66-like | ||||
Swissprot | Q9ZUG9 | 1e-127 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | R0HCZ6 | 1e-136 | R0HCZ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010429396.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-106 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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