PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g085800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 212aa MW: 24306.7 Da PI: 9.1938

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g085800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	191.4	3.2e-59	6	161	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssaes 96 + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++qq++++ + + +++++ kr rel ++ s++s+ +++ + Csa09g085800.1 6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQQHQHQRQPQPLF-TTSSNIKRLRELqrlPDSSPSSSSACDIETFFP 99 569*******************************************9999887666654.566666777776233223333334444444444 PP DUF702 97 kkeletss....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ l +e++++a frcv+vss+ dg+e++aYqt+v+igGh+f+GiL+dqG+++ Csa09g085800.1 100 ILGVQIRTtpehLLAELKVPADFRCVKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGPDK 161 445555443333778999****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.4E-55	6	160	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.5E-28	9	50	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.6E-26	114	159	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQQHQHQR 60 QPQPLFTTSS NIKRLRELQR LPDSSPSSSS ACDIETFFPI LGVQIRTTPE HLLAELKVPA 120 DFRCVKVSSI HDGKEQYAYQ TTVNIGGHIF RGILHDQGPD KVMVDHHNNR NCNNRQETLL 180 PPSTSSYPLM ITSHFTDFMS GSNQYSSVLR R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g085800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	1e-81	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	1e-81	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429051.1	1e-118	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	2e-89	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A1P8AZ09	2e-93	A0A1P8AZ09_ARATH; SHI-related sequence3
TrEMBL	A0A1P8AZ68	2e-93	A0A1P8AZ68_ARATH; SHI-related sequence3
STRING	XP_010429051.1	1e-118	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	6e-87	SHI-related sequence3