PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g084700.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 378aa MW: 42766 Da PI: 6.6854

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g084700.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.9e-11	91	133	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L Csa09g084700.1 91 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELE 133 6899**************************8888887776554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-4	83	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.404	90	134	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-9	90	134	No hit	No description
Pfam	PF00170	6.1E-8	91	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-7	92	134	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-30	179	253	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MMSSSSPTQL ASFRDMGIYE PFQQIVGWGN VYKSDINDHS PNTATSSIIQ VDARVDDHTN 60 IKTNYASSSH NQIEAEPSSN DNQDDDGRIH DKMKRRLAQN REAARKSRLR KKAYVQQLEE 120 SRLKLSQLEQ ELEKVKQQGL CVRNSSNSSY LGAAGSINTG IASFEMEYSH WLEEQSRRVS 180 EMRIALQSHI SDIELRMLVE SCLNHYANLF RMKSNAAKAD VFYLISGMWR TSTERFFQWI 240 GGFRPSELLN VVMPYLQPLT DQQILEVRNL QQSSQQAEDA LSQGIDKLQQ SLAESIVVDA 300 VIESPDYTAH MAAAIENLQA LEGFVTQADH LRQQTLQQMA KILTTRQSAR GLLALGEYLH 360 RLRALSSLWA ARPREPT*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MMSSSSPTQL ASFRDMGIYE PFQQIVGWGN VYKSDINDHS PNTATSSIIQ VDARVDDHTN  60
IKTNYASSSH NQIEAEPSSN DNQDDDGRIH DKMKRRLAQN REAARKSRLR KKAYVQQLEE  120
SRLKLSQLEQ ELEKVKQQGL CVRNSSNSSY LGAAGSINTG IASFEMEYSH WLEEQSRRVS  180
EMRIALQSHI SDIELRMLVE SCLNHYANLF RMKSNAAKAD VFYLISGMWR TSTERFFQWI  240
GGFRPSELLN VVMPYLQPLT DQQILEVRNL QQSSQQAEDA LSQGIDKLQQ SLAESIVVDA  300
VIESPDYTAH MAAAIENLQA LEGFVTQADH LRQQTLQQMA KILTTRQSAR GLLALGEYLH  360
RLRALSSLWA ARPREPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g084700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428879.1	0.0	PREDICTED: transcription factor TGA7-like
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	R0GHF3	0.0	R0GHF3_9BRAS; Uncharacterized protein
STRING	XP_010428879.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]