PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g084440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 286aa    MW: 31557.4 Da    PI: 6.2422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g084440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-184393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr ++ +g+Wv eIr p   +k++r++lg++ tae Aa+a++aa ++l+g
  Csa09g084440.1 43 KKYKGVRMRS-WGSWVTEIRAP---NKKTRIWLGSYSTAEAAARAYDAALLCLKG 93
                    59*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.54E-1743102No hitNo description
SuperFamilySSF541714.64E-1944102IPR016177DNA-binding domain
PfamPF008471.0E-114493IPR001471AP2/ERF domain
PROSITE profilePS5103221.70744101IPR001471AP2/ERF domain
SMARTSM003805.8E-3344107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2944102IPR001471AP2/ERF domain
PRINTSPR003677.5E-94556IPR001471AP2/ERF domain
PRINTSPR003677.5E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVKQELKIQV TTSSISSLSH SSTSSTSSSS SLHHHQSSKN KIKKYKGVRM RSWGSWVTEI  60
RAPNKKTRIW LGSYSTAEAA ARAYDAALLC LKGPKANFNF PHIITNSSFL MNIDEKTLLS  120
PKSIQKVAAQ AANSFSSDPF APPSDDDHDD GLHHHPSPSS SAASSPPHHN DDDGDLVSLM  180
ESHHHDHDDR IHHHPSPSSS AASSPPDDGG HHNDDDGDLV SLMESFVDYN EHVSLMDPSW  240
YGFDHNEMFF TNRAPFDYSS HLNSSKTTTM DDLYDDADIK LWSFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14441021473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g084440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107041e-149AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAY5608431e-149AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds.
GenBankBT0126291e-149BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds.
GenBankCP0026841e-149CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428846.10.0PREDICTED: ethylene-responsive transcription factor ERF013-like
SwissprotQ9SFE41e-60ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLR0IFN41e-106R0IFN4_9BRAS; Uncharacterized protein
STRINGXP_010428846.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.19e-49ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]