PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g080160.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 348aa MW: 38536.9 Da PI: 7.0009

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g080160.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.7	9e-70	117	283	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakr+er +qla++++++++s++++++kr re + sa Csa09g080160.1 117 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRQERLAQLASLQHHSTSSRETQNTKRLREAsggdnnddkdhSGGGGSA 211 7899********************************************************999977777777777777777666656777899 PP DUF702 86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 l +t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Csa09g080160.1 212 LVTTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 283 **********998876***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-63	120	282	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.2E-28	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-26	231	281	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAGFFYLGGR DNNSNNNNKQ DHHQVDKDHH HQDKSNYLCL YKDEIYNNNK GFEIWPPQYF 60 QQQEQPPQQQ HASAAANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG 120 MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRQERLAQ LASLQHHSTS 180 SRETQNTKRL REASGGDNND DKDHSGGGGS ALVTTRVVNA NSNSGLEVSQ HLPPEVNSPA 240 VFRCVRVSSI EEDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHHHHHH LNLLASTATT 300 TNVEETATKA VAGNNSNGLM LDPSSLYPAH QLNSFIAGTP FFTPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAGFFYLGGR DNNSNNNNKQ DHHQVDKDHH HQDKSNYLCL YKDEIYNNNK GFEIWPPQYF  60
QQQEQPPQQQ HASAAANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG  120
MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRQERLAQ LASLQHHSTS  180
SRETQNTKRL REASGGDNND DKDHSGGGGS ALVTTRVVNA NSNSGLEVSQ HLPPEVNSPA  240
VFRCVRVSSI EEDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHHHHHH LNLLASTATT  300
TNVEETATKA VAGNNSNGLM LDPSSLYPAH QLNSFIAGTP FFTPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g080160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY800620	0.0	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	0.0	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428580.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	0.0	A0A178W9B5_ARATH; SRS5
STRING	XP_010428580.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-172	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]