PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g080000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 183aa    MW: 20002.1 Da    PI: 6.5161
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g080000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.56.9e-144486547
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                    ++ +rkq+NRe+ArrsR RK+++++ L+  v  L +eN +L  
  Csa09g080000.1 44 RKRKRKQSNRESARRSRMRKQKYLDDLTVQVTHLRKENAQLVA 86
                    5789***********************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.101.4E-51357IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003386.9E-1740104IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79542105IPR004827Basic-leucine zipper domain
PfamPF001701.4E-114485IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-124496No hitNo description
CDDcd147022.53E-204595No hitNo description
PROSITE patternPS0003604762IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-1058114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNNKTEMASS TSGNSSSTIS ITGLQNSGSE SDLRGQQQDL IDERKRKRKQ SNRESARRSR  60
MRKQKYLDDL TVQVTHLRKE NAQLVAGIAV TTQHYVTIEA ENDILRAQLL ELNHRLQSLN  120
EIVDFVEASS SSSGFGMETG QGLNDVGGGG FYDGVMNHMN LGFYNQSIMA SASTAGDVFN  180
CC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348RKRKRK
24364RKRKRKQSNRESARRSRMRKQK
35663RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g080000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428558.11e-132PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L51e-106BZP44_ARATH; bZIP transcription factor 44
TrEMBLD7KSN71e-104D7KSN7_ARALL; BZIP transcription factor family protein
STRINGXP_010428558.11e-131(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.19e-99basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]