PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g079830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 311aa    MW: 33999.7 Da    PI: 8.5787
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g079830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.2e-3273128258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++vrY+eClkNhAa++Gg + DGCgEfmps geegt++al+CaAC+CHRnFHR+e +
  Csa09g079830.1  73 STVRYRECLKNHAANVGGSVHDGCGEFMPS-GEEGTIEALRCAACDCHRNFHRKEID 128
                     689**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2674128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2975127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-3076127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0377126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-31232303IPR009057Homeodomain-like
SuperFamilySSF466896.22E-20235303IPR009057Homeodomain-like
PROSITE profilePS500718.568240304IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-29242299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDMRSHEMIE RRRDDNGNNN GGVISNIIST NDDNCNGNNN NNNTRVSCNS QTLDHHQSKS  60
PSSFSISAAV KSSTVRYREC LKNHAANVGG SVHDGCGEFM PSGEEGTIEA LRCAACDCHR  120
NFHRKEIDGV GSSDLVSHHR HHHHHHNQYG GGGGGRRPPP QNMMLNPLML PPPPNYQPIH  180
HHKYGMSPPG GGGMVTPMSV AYGGGGGAES SSEDLNLYGQ SSGEGAGAAA GGQMAYSMSS  240
SKKRFRTKFT TEQKERMMEF AEKLGWRMNK QDEEELKRFC GEIGVKRQVF KVWMHNNKNN  300
AKKPPTPTTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-232413011676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g079830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0258140.0AC025814.7 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence.
GenBankAK2290380.0AK229038.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-33-K14.
GenBankAY0844620.0AY084462.1 Arabidopsis thaliana clone 10873 mRNA, complete sequence.
GenBankBT0288940.0BT028894.1 Arabidopsis thaliana unknown protein (At1g75240) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428533.10.0PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_010428535.10.0PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9FRL51e-142ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLR0IFI11e-160R0IFI1_9BRAS; Uncharacterized protein
STRINGXP_010428533.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-99homeobox protein 33