PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g079070.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 301aa MW: 34108.3 Da PI: 7.2223

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g079070.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81	1.2e-25	133	183	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Csa09g079070.1 133 SKALSMETVSRYFYMPITQAAIELNVGLTLLKRRCRELGIRRWPHRKLMSL 183 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.972	104	205	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-20	136	183	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MADHKTKEEK SFSFLTHSPS FDQSSLSYPL FDWEEDLLAL HESSASQSFP LTTTSLSLPD 60 LEPLSDDVLN SYSSASWNET EHNRGNGASL ENKTKHGAVQ ETTKKRKLNE RRRENSVRII 120 SDISTTYTTC PASKALSMET VSRYFYMPIT QAAIELNVGL TLLKRRCREL GIRRWPHRKL 180 MSLKTLIRNV KELQKMEGEE NAGKLQNALE MLEKEKRTIE ELPDLEFEDK TKRLRQACFK 240 ANHKRKKRRS LKSDQAHIAS CSSSGSVASD ESVNDAGMEE SDEEVKYLLC GFSNEFSSGL 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g079070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428433.1	0.0	PREDICTED: protein RKD2
Swissprot	Q9CA66	1e-167	RKD2_ARATH; Protein RKD2
TrEMBL	R0GEJ6	1e-179	R0GEJ6_9BRAS; Uncharacterized protein
STRING	XP_010428433.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-140	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]