PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g078700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 273aa MW: 30269.5 Da PI: 6.3486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4e-19 | 14 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd++l+ v+++G g W++Iar+++ gRt++++k++w+++ Csa09g078700.1 14 KGVWTQEEDQILIAHVQRHGEGgwrtlpdkagIWSAIARRLP-GRTDNEIKNHWNTH 69 799***************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-16 | 3 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-22 | 5 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.072 | 9 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-18 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.09E-14 | 17 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVRTPCCRAV GLKKGVWTQE EDQILIAHVQ RHGEGGWRTL PDKAGIWSAI ARRLPGRTDN 60 EIKNHWNTHI KKRLVKKGID PLTHKSLIDG AGKSSDHPET PRENTSVHQE EDDHKSKDNK 120 SSSRSSARFL NRVANRFGQR INQSVLSDII GSGSLLASHT TPTISASECE RSTSSSSTPT 180 SSNILTDQSI NVDGTSLSSS TCSDSSDIFL YDDIFSDIED MTRFSSRFSS NVVSHDGEEF 240 LMLDGSFLEN TSFMRELTMI LQEDKMETTS IY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g078700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428376.2 | 1e-162 | PREDICTED: transcription factor MYB122-like, partial | ||||
Swissprot | Q9C9C8 | 1e-116 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A1J3H9B0 | 1e-120 | A0A1J3H9B0_NOCCA; Uncharacterized protein | ||||
STRING | XP_010428376.1 | 1e-162 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-102 | myb domain protein 122 |