PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g075940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25574.3 Da    PI: 9.1453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g075940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.1e-225199149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k ie + +rqvtfskRr+g++KKA ELSvLC+a++ +i fs  +++y +
  Csa09g075940.1 51 KEIEVENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCDRIYSF 99
                    679999************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.56743103IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-2343113IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-2743102IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-204565IPR002100Transcription factor, MADS-box
PfamPF003194.2E-225399IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-206580IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-2080101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEDVGEASTI TCLPPAKQKP LRNPNLLANQ KKETTPKKPR TTKGRQKIEI KEIEVENRRQ  60
VTFSKRRTGL FKKAAELSVL CGAQIGIITF SRCDRIYSFG NVDTLVDKYI RKTPVMLRTN  120
PGGNVAAGGE NNDGLMWWER AVESVPEEDM EEYKMALGVL RENLLTRISQ MGNDRTVENL  180
PAFPNEMAMA DWKLTNENLM ASNDRGGYLG NDAGLDLAVP FMSPKPRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g075940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0165291e-176AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBankAY1412351e-176AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds.
GenBankBT0256471e-176BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds.
GenBankCP0026841e-176CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464211e-176DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds.
GenBankDQ6529291e-176DQ652929.1 Arabidopsis thaliana clone 0000018934_0000013069 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431491.11e-169PREDICTED: MADS-box transcription factor 23-like
TrEMBLR0ICD31e-130R0ICD3_9BRAS; Uncharacterized protein
STRINGXP_010431491.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-114M-type_MADS family protein