PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g070900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21311.9 Da PI: 4.6992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34 | 8.9e-11 | 6 | 48 | 85 | 128 |
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at k++ + ++ vg kk+L +y g++p+g+kt W+mhey+ Csa09g070900.1 6 ATVAAKKINA-GKGIVGYKKVLEYYVGERPNGVKTCWLMHEYSS 48 6778899998.8999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.907 | 1 | 68 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-12 | 7 | 55 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-4 | 14 | 47 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEDTNATVAA KKINAGKGIV GYKKVLEYYV GERPNGVKTC WLMHEYSSES SSVDNEKVDH 60 ALIYLTSKGA KKKKADQEEE NEKLKKDEEA VEHLDLHQPD QSQLHDMVHQ QPQYCLLDMI 120 DAWLKTVEEQ HSPEYCLLPA EHQKPQTQPF PYNFPEFISF EQEPVIPEDY EVFVADFIKP 180 HSFQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g070900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431447.1 | 1e-108 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A384KMI2 | 5e-35 | A0A384KMI2_ARATH; NAC064 | ||||
TrEMBL | Q9LXY7 | 5e-35 | Q9LXY7_ARATH; NAC domain containing protein 64 | ||||
STRING | XP_010431447.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 4e-37 | NAC domain containing protein 64 |