PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g069310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 566aa MW: 64307.4 Da PI: 4.4743

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g069310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.4	4.5e-30	46	175	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleev..ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+ ++P+d e++ L +k + el ++ i+ v+iy+++P++L + ka+++e++f skr+k + gkr++r +k gyWkat +k+ Csa09g069310.1 46 PPGVNYRPKDLEVI-SLLGRKQDYLGgnRELLDTlsIHVVNIYESNPEELSeNFKKANDTELFFISKRNKIGKDGKRQKRDAKGGYWKATVASKK 139 9***********.778777543333334433225**********933444577799999999999999******************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ lvg+k+ L +y g++++g kt+W+mhey + Csa09g069310.1 140 IDA-GQGLVGCKTALSYYVGKRSNGIKTSWLMHEYWI 175 99.999***************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-34	35	196	IPR003441	NAC domain
PROSITE profile	PS51005	34.684	45	196	IPR003441	NAC domain
Pfam	PF02365	4.7E-13	46	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DHHSLSSSPS TRPCFPPGVN YRPKDLEVIS 60 LLGRKQDYLG GNRELLDTLS IHVVNIYESN PEELSENFKK ANDTELFFIS KRNKIGKDGK 120 RQKRDAKGGY WKATVASKKI DAGQGLVGCK TALSYYVGKR SNGIKTSWLM HEYWIDQCPS 180 ADDDVKDYSM CKIYRSPQAI NKEKKAEEEE NKRQKKAVQQ QPPTVEYHQP HAPLDSYQPQ 240 PHHDIAYQQH VLSQPAPLDS YQPQPHHDLA YQQQQQQFWP GPLDSYWTHQ RQFMAARPDS 300 HQLQPHYDSA YQQFIRMLEG DNGGFQQQQP SLAPPPQGQD SRTGMVMTQE DGFFNPINEL 360 LNYEEEHGVV TEKQQQEQSA PILPPPPPPS QGHQLQPYYD FAYQQQQQFL MTTTTLEEEN 420 VGATKHQEEE LSLPPPPPPP QGDQDSRSKM AMTRLSNDKS TEEDLFDMSD EDRFFDVDAL 480 FSNEEEEEDG VDTQQQQQEQ STPIPPPQGQ DDSTSGNVMT NEDYDFPVIA DDFEGFWSDS 540 IKSSYTLLDG DEESNDIGLF FNASS*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DHHSLSSSPS TRPCFPPGVN YRPKDLEVIS  60
LLGRKQDYLG GNRELLDTLS IHVVNIYESN PEELSENFKK ANDTELFFIS KRNKIGKDGK  120
RQKRDAKGGY WKATVASKKI DAGQGLVGCK TALSYYVGKR SNGIKTSWLM HEYWIDQCPS  180
ADDDVKDYSM CKIYRSPQAI NKEKKAEEEE NKRQKKAVQQ QPPTVEYHQP HAPLDSYQPQ  240
PHHDIAYQQH VLSQPAPLDS YQPQPHHDLA YQQQQQQFWP GPLDSYWTHQ RQFMAARPDS  300
HQLQPHYDSA YQQFIRMLEG DNGGFQQQQP SLAPPPQGQD SRTGMVMTQE DGFFNPINEL  360
LNYEEEHGVV TEKQQQEQSA PILPPPPPPS QGHQLQPYYD FAYQQQQQFL MTTTTLEEEN  420
VGATKHQEEE LSLPPPPPPP QGDQDSRSKM AMTRLSNDKS TEEDLFDMSD EDRFFDVDAL  480
FSNEEEEEDG VDTQQQQQEQ STPIPPPQGQ DDSTSGNVMT NEDYDFPVIA DDFEGFWSDS  540
IKSSYTLLDG DEESNDIGLF FNASS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	37	195	9	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	37	195	9	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	37	195	9	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	37	195	9	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	37	195	12	167	NAC domain-containing protein 19
3swm_B	2e-16	37	195	12	167	NAC domain-containing protein 19
3swm_C	2e-16	37	195	12	167	NAC domain-containing protein 19
3swm_D	2e-16	37	195	12	167	NAC domain-containing protein 19
3swp_A	2e-16	37	195	12	167	NAC domain-containing protein 19
3swp_B	2e-16	37	195	12	167	NAC domain-containing protein 19
3swp_C	2e-16	37	195	12	167	NAC domain-containing protein 19
3swp_D	2e-16	37	195	12	167	NAC domain-containing protein 19
4dul_A	1e-16	37	195	9	164	NAC domain-containing protein 19
4dul_B	1e-16	37	195	9	164	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g069310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431419.1	0.0	PREDICTED: NAC domain-containing protein 53-like
STRING	XP_010431419.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	2e-62	NAC domain containing protein 63