PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g068910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 398aa MW: 45951.4 Da PI: 7.7804

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g068910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.7	4.1e-31	46	175	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkve..gkkleleev..ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+ ++P+d e++ L +k + g + el ++ i+ v+iy+++P +L +k+k+ +++ewyf skr+k + gkr++r +k gyWkat +k+ Csa09g068910.1 46 PPGVNYRPKDLEVI-SLLGRKQDyfGGNRELLDTlsIHVVNIYESNPDELSEKFKKaNDTEWYFISKRNKMGKDGKRQTRDAKGGYWKATVASKK 139 9***********.778777541134434433225**********9554442788********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ lvg k+ L ++ g++p+g+kt+W+mhey + Csa09g068910.1 140 IDA-GQGLVGYKTALSYFVGKRPHGKKTSWLMHEYWI 175 99.999***************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-36	35	196	IPR003441	NAC domain
PROSITE profile	PS51005	37.169	45	196	IPR003441	NAC domain
Pfam	PF02365	3.0E-14	46	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DHHSLSSSPS TRPCFPPGVN YRPKDLEVIS 60 LLGRKQDYFG GNRELLDTLS IHVVNIYESN PDELSEKFKK ANDTEWYFIS KRNKMGKDGK 120 RQTRDAKGGY WKATVASKKI DAGQGLVGYK TALSYFVGKR PHGKKTSWLM HEYWIDQCPS 180 ADDDVKDYSM CKIYRSPQAI NKQKKAEEEE NKRQKKVVQQ QPPTVEYHQP HALLDSYQPQ 240 PHHDIAYQQQ HLFQPAPLDS YQQQQQFWPG PLDSYRPHRW QFMAARPDSH QHYDSAYQQF 300 IRMLEGDNGG VQQQQPSFAP PPPPQGHDSR SGMAMSQEDG FFNPINELLN YEEEHGVVTE 360 KQQQEQSAPI LLNLQWWAIL YIYIYIYIYG KVKNTNY*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DHHSLSSSPS TRPCFPPGVN YRPKDLEVIS  60
LLGRKQDYFG GNRELLDTLS IHVVNIYESN PDELSEKFKK ANDTEWYFIS KRNKMGKDGK  120
RQTRDAKGGY WKATVASKKI DAGQGLVGYK TALSYFVGKR PHGKKTSWLM HEYWIDQCPS  180
ADDDVKDYSM CKIYRSPQAI NKQKKAEEEE NKRQKKVVQQ QPPTVEYHQP HALLDSYQPQ  240
PHHDIAYQQQ HLFQPAPLDS YQQQQQFWPG PLDSYRPHRW QFMAARPDSH QHYDSAYQQF  300
IRMLEGDNGG VQQQQPSFAP PPPPQGHDSR SGMAMSQEDG FFNPINELLN YEEEHGVVTE  360
KQQQEQSAPI LLNLQWWAIL YIYIYIYIYG KVKNTNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	37	202	9	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	37	202	9	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	37	202	9	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	37	202	9	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	37	202	12	174	NAC domain-containing protein 19
3swm_B	2e-20	37	202	12	174	NAC domain-containing protein 19
3swm_C	2e-20	37	202	12	174	NAC domain-containing protein 19
3swm_D	2e-20	37	202	12	174	NAC domain-containing protein 19
3swp_A	2e-20	37	202	12	174	NAC domain-containing protein 19
3swp_B	2e-20	37	202	12	174	NAC domain-containing protein 19
3swp_C	2e-20	37	202	12	174	NAC domain-containing protein 19
3swp_D	2e-20	37	202	12	174	NAC domain-containing protein 19
4dul_A	2e-20	37	202	9	171	NAC domain-containing protein 19
4dul_B	2e-20	37	202	9	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g068910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431411.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	R0H259	6e-78	R0H259_9BRAS; Uncharacterized protein
STRING	XP_010431411.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	3e-57	NAC domain containing protein 63