PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g068880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 572aa MW: 65623.3 Da PI: 4.515 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 5.7e-31 | 43 | 172 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleev..ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+ ++P+d e++ L +k + el ++ i+ v+iy+++P +L + ka+++ewyf s+r+k + gkr++r++k gyW+at +++ Csa09g068880.1 43 PPGVNYRPKDLEVI-SLLGRKQDYLGgnRELLDTlsIHVVNIYESNPDELSeNFKKANDTEWYFISERNKLGKDGKRQKRVAKGGYWHATVASNK 136 9*************.778777543333334433225**************9444455788*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + ++ lvg+k+ L ++ g++p+g+kt+W+mhey + Csa09g068880.1 137 VDA-GQGLVGCKTALSYFVGKRPNGKKTSWLMHEYWI 172 *99.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-35 | 33 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.017 | 42 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-14 | 43 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MPGRNKRKER SLPDTEPEPS GIPSSSADDH HMSSSPSTRP CFPPGVNYRP KDLEVISLLG 60 RKQDYLGGNR ELLDTLSIHV VNIYESNPDE LSENFKKAND TEWYFISERN KLGKDGKRQK 120 RVAKGGYWHA TVASNKVDAG QGLVGCKTAL SYFVGKRPNG KKTSWLMHEY WIDQCPSADD 180 EVKDYSMCKI YRSPQAINKQ KKAEEEENKK QKRVVQQQPP TVEYHQPQPH HDIAFQQQHL 240 FQPAPLDSYQ PQPRDLAYQQ QQQQFWPGPL DSYRMHQRQF WAAPPDSHQL QPSYDYAYQQ 300 LIRTLEEENV GVQQQLAPPP PPQGQDSRSG MVMSQEDGFF NPINELLNYE EEHGVVTEKQ 360 QQEQSAPILP PPPPPQGHQL QPYYDFAYQQ QQFLMTTTTP LEEENVGATK HQEEELSLPP 420 PPPPPQGDQD SRSKMAMTRL ISNDNSTEED LFDMSDEDRF FDVDALFSNE EEEDGVDTHQ 480 QQQEQCTPIL PHQQPDYCLL PAEHQKPQTQ PFPYNFPELI SFEQEPVIPE DFEDFFADFI 540 KPHSLNGDED SSSYGLFEGF DTEGMIKDCT H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-19 | 31 | 199 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-19 | 31 | 199 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-19 | 31 | 199 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-19 | 31 | 199 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-19 | 34 | 199 | 12 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-19 | 31 | 199 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-19 | 31 | 199 | 3 | 171 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g068880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507484.1 | 0.0 | PREDICTED: uncharacterized protein LOC104784116 | ||||
STRING | XP_010431408.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 3e-54 | NAC domain containing protein 63 |