PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 372aa    MW: 42757.8 Da    PI: 5.3349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.3e-36591872128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     ppG++F Ptdeel+ +yLk+ ++++k++   ++ i+ v+iy+++P++L +++++ +ekew+f s+r k+ ++ kr++r ++ gyW+at   k+v 
  Csa09g068850.1  59 PPGYQFVPTDEELILYYLKPFLQKNKNSWlLSApIHYVNIYESNPQQLSEQFEKgNEKEWFFISERTKQGRSLKRQKRGANGGYWNATVAAKKVN 153
                     9**********************99954423345**************96555526779******9999999******99*************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++  vg kk+L +y g++p+g+kt W+mhey+ 
  Csa09g068850.1 154 A-GKGIVGYKKVLEYYVGERPNGVKTCWLMHEYSS 187
                     9.9999***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-4546207IPR003441NAC domain
PROSITE profilePS5100541.29258207IPR003441NAC domain
PfamPF023653.3E-2059186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAIPPRNKCK ARSSPERQTQ PTEWQTQPPP PKQNRDNPSS SSSIVDNFSS PSTKPFNFPP  60
GYQFVPTDEE LILYYLKPFL QKNKNSWLLS APIHYVNIYE SNPQQLSEQF EKGNEKEWFF  120
ISERTKQGRS LKRQKRGANG GYWNATVAAK KVNAGKGIVG YKKVLEYYVG ERPNGVKTCW  180
LMHEYSSESS SVDNEKVDYA LCKIYLTPKG AKKKKADQEE ENEKLKKEEE AVEHLDLHQP  240
DQSQPHDMVY QQPPYCLLDM IDVWLKNVEE QHGVSVDTQQ QQQEQCTPIL AHQQPEYCLL  300
PAEHQKPQTQ PFPYKFPELI SFEQEPVISE DFEDFFADFI KPHSLNGDED SSSYGLFEGF  360
DTQGMIKACT N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-225621315171NO APICAL MERISTEM PROTEIN
1ut4_B3e-225621315171NO APICAL MERISTEM PROTEIN
1ut7_A3e-225621315171NO APICAL MERISTEM PROTEIN
1ut7_B3e-225621315171NO APICAL MERISTEM PROTEIN
3swm_A3e-225621318174NAC domain-containing protein 19
3swm_B3e-225621318174NAC domain-containing protein 19
3swm_C3e-225621318174NAC domain-containing protein 19
3swm_D3e-225621318174NAC domain-containing protein 19
3swp_A3e-225621318174NAC domain-containing protein 19
3swp_B3e-225621318174NAC domain-containing protein 19
3swp_C3e-225621318174NAC domain-containing protein 19
3swp_D3e-225621318174NAC domain-containing protein 19
4dul_A3e-225621315171NAC domain-containing protein 19
4dul_B3e-225621315171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431407.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A384KMI21e-107A0A384KMI2_ARATH; NAC064
TrEMBLQ9LXY71e-107Q9LXY7_ARATH; NAC domain containing protein 64
STRINGXP_010431407.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.19e-99NAC domain containing protein 64