PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068840.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 409aa    MW: 47257.7 Da    PI: 4.4318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068840.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.41.8e-1646170128
             NAM  70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      gkr++r +k gyW+at  +k++ + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa09g068840.2   4 DGKRQKRDAKGGYWHATVASKKIDA-GQGLVGYKTALDYYVGKRPHGKKTSWLMHEYWI 61 
                     689********************99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.152182IPR003441NAC domain
SuperFamilySSF1019416.28E-19381IPR003441NAC domain
PfamPF023653.7E-7859IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGKDGKRQKR DAKGGYWHAT VASKKIDAGQ GLVGYKTALD YYVGKRPHGK KTSWLMHEYW  60
IDQCPSADDD VKDYSMCKIY RSTQAINKKK AEEEENKKQK RVVQQQSPTV EYHQPQPHHD  120
IAFQQQHLFK PAPLDSYQPQ PHDLAYQQQQ QQFWPGPLDS YRMHQRQFWA APPDSHQLQP  180
SYDYAYQQLI RTLEEENVGV QQQLAPPPPP QGQDSRSGMV MSQEDGFFNP INELLNYEEE  240
HGVVTEKQQQ EQSAPILPPP PPPQGHQLQP YYDFAYQQQQ FRMTTTTLEE ENVGATKHQE  300
EELSLPPPPP PPQGDQDSRS KMAMTRLSND NSTEEDLFDM SDEDRFFDVD ALFSNEEEEE  360
EDGVDTQQQQ QEQSTPIPPL QGQDDSTSGN VMTSEDYDFL YLWNPWNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068840.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507484.10.0PREDICTED: uncharacterized protein LOC104784116
STRINGXP_010507484.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-33NAC domain containing protein 63