PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 522aa    MW: 60061.1 Da    PI: 4.6573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-31451742128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleev..ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     ppG+ ++P+d e++   L +k +      el ++  i+ v+iy+++P +L +k+k+ +++ewyf skr+k  + gkr++r +k gyW+at  +k+
  Csa09g068840.1  45 PPGVNYRPKDLEVI-SLLGRKQDYLGgnRELLDTlsIHVVNIYESNPDELSEKFKKaNDTEWYFISKRNKMGKDGKRQKRDAKGGYWHATVASKK 138
                     9*************.778777543333334433225**************9554442788*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa09g068840.1 139 IDA-GQGLVGYKTALDYYVGKRPHGKKTSWLMHEYWI 174
                     *99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-3638194IPR003441NAC domain
PROSITE profilePS5100537.09744195IPR003441NAC domain
PfamPF023659.9E-1545172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMSMPGRNKR KERSLPEPEP EPSGIPSSSA DHSLSSSPST RPCFPPGVNY RPKDLEVISL  60
LGRKQDYLGG NRELLDTLSI HVVNIYESNP DELSEKFKKA NDTEWYFISK RNKMGKDGKR  120
QKRDAKGGYW HATVASKKID AGQGLVGYKT ALDYYVGKRP HGKKTSWLMH EYWIDQCPSA  180
DDDVKDYSMC KIYRSTQAIN KKKAEEEENK KQKRVVQQQS PTVEYHQPQP HHDIAFQQQH  240
LFKPAPLDSY QPQPHDLAYQ QQQQQFWPGP LDSYRMHQRQ FWAAPPDSHQ LQPSYDYAYQ  300
QLIRTLEEEN VGVQQQLAPP PPPQGQDSRS GMVMSQEDGF FNPINELLNY EEEHGVVTEK  360
QQQEQSAPIL PPPPPPQGHQ LQPYYDFAYQ QQQFRMTTTT LEEENVGATK HQEEELSLPP  420
PPPPPQGDQD SRSKMAMTRL SNDNSTEEDL FDMSDEDRFF DVDALFSNEE EEEEDGVDTQ  480
QQQQEQSTPI PPLQGQDDST SGNVMTSEDY DFLYLWNPWN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-19362019171NO APICAL MERISTEM PROTEIN
1ut4_B5e-19362019171NO APICAL MERISTEM PROTEIN
1ut7_A5e-19362019171NO APICAL MERISTEM PROTEIN
1ut7_B5e-19362019171NO APICAL MERISTEM PROTEIN
3swm_A4e-193620112174NAC domain-containing protein 19
3swm_B4e-193620112174NAC domain-containing protein 19
3swm_C4e-193620112174NAC domain-containing protein 19
3swm_D4e-193620112174NAC domain-containing protein 19
3swp_A4e-193620112174NAC domain-containing protein 19
3swp_B4e-193620112174NAC domain-containing protein 19
3swp_C4e-193620112174NAC domain-containing protein 19
3swp_D4e-193620112174NAC domain-containing protein 19
4dul_A5e-19362019171NAC domain-containing protein 19
4dul_B5e-19362019171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507484.10.0PREDICTED: uncharacterized protein LOC104784116
STRINGXP_010431408.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-54NAC domain containing protein 63