PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g068830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36054.2 Da PI: 4.9992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.9 | 2.1e-32 | 51 | 182 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkya....tgkrknratksgyWkatgkdk 90 ppG++F P+de+l+ +yLk+ +g+ +l v i++v+iy+++P+ L +k+++ +ekew+f s+r k + g++k+r + gyW+at k Csa09g068830.1 51 PPGYKFVPKDEQLIFHYLKPFSQGDIYSLLGVpIHQVNIYESDPQLLTEKYEKgNEKEWFFISERTKLGKgggrGGRQKKRGSNGGYWSATVAAK 145 9*************************9999999**************96555526679998888888777444234466667889********** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ vg k++L +y g++p+g+k dW+m+ey l Csa09g068830.1 146 KINA-GNGIVGYKTILDYYVGKQPNGVKGDWLMQEYWL 182 ***9.9999***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-41 | 46 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.275 | 50 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-16 | 51 | 181 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAIPPRNKRK ASSSPERQTQ PPEPPYNPDV PSSSAADDFF PPPTTQPFVF PPGYKFVPKD 60 EQLIFHYLKP FSQGDIYSLL GVPIHQVNIY ESDPQLLTEK YEKGNEKEWF FISERTKLGK 120 GGGRGGRQKK RGSNGGYWSA TVAAKKINAG NGIVGYKTIL DYYVGKQPNG VKGDWLMQEY 180 WLESSSSDDD HNNENKVDHA LCKIYLTPRG AKKKKKSEEE EIVQLDLNQP QPQDIVYQRQ 240 QYCELPAQDQ NPLPQKLPFP CNLDGFSEFI SFEQQPVIAD DFEGFWTDFI KSSYTLLDGD 300 EEYNNIGLFF NASSQKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-22 | 43 | 213 | 14 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g068830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431409.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A384KMI2 | 1e-122 | A0A384KMI2_ARATH; NAC064 | ||||
TrEMBL | Q9LXY7 | 1e-122 | Q9LXY7_ARATH; NAC domain containing protein 64 | ||||
STRING | XP_010427482.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 1e-101 | NAC domain containing protein 64 |