PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 189aa    MW: 21640.1 Da    PI: 4.108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.89.4e-1581381126
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGf+F+P++ e+  ++Lk+k+ g ++e+ ++  +e+ d+++ +P+dLp   + +e++wy+F++++ ++           +  W    ++ +vl
  Csa09g068820.1   8 LPPGFHFSPSNCEIAIYFLKNKALGLPMEARSIpEEEChDLFSKHPRDLPG--YPGETHWYYFCRKRDSQV--------NPHNLWTPIEQESDVL 92 
                     79***************************97763344489**********4..35789******9977543........3445688888888888 PP

             NAM  94 sk..kgelvglkktLvfy...........kgrapkgektdWvmhey 126
                     +   +++lvg  + + +            + +++++ k dW+++e 
  Csa09g068820.1  93 DPknNDALVGFSRRFGLVemeegsddsclSYDEEEAPKYDWFIDEI 138
                     7744444566666666664444443333334555666677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-227155IPR003441NAC domain
PROSITE profilePS5100523.4678157IPR003441NAC domain
PfamPF023659.0E-89138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDPIFRDLPP GFHFSPSNCE IAIYFLKNKA LGLPMEARSI PEEECHDLFS KHPRDLPGYP  60
GETHWYYFCR KRDSQVNPHN LWTPIEQESD VLDPKNNDAL VGFSRRFGLV EMEEGSDDSC  120
LSYDEEEAPK YDWFIDEISL PRTVADTDLV LCHVFGEEIE PQVIHDLPIT EDGESVDNPA  180
VFFGLLYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431404.11e-138PREDICTED: NAC domain-containing protein 79
TrEMBLA0A178VFA91e-76A0A178VFA9_ARATH; Uncharacterized protein
STRINGXP_010431404.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.13e-80NAC family protein