PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g068810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 591aa MW: 68126 Da PI: 4.6941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.7 | 1.4e-29 | 47 | 176 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk..vegkk..leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppG+ ++P+d e++ L +k g + l l++ i+ v+iy+++P++L +k+k+ ++++ +f skr+k + gkr++r +k gyWkat +k Csa09g068810.1 47 PPGVNYRPKDLEVI-SLLGRKqyYLGGNreL-LATLsIHLVNIYESNPEELSEKFKKaNDTDRFFISKRNKMGKDGKRQKRDAKGGYWKATVASK 139 9*************.6666653433333232.22335**************965554266788999999999999******************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ lvg k+ L +y g++p+g+kt+W+mhey + Csa09g068810.1 140 KIDA-GQGLVGYKTALDYYVGKRPNGKKTSWLMHEYWI 176 **99.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-34 | 37 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.035 | 46 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-12 | 47 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MSMPGRNKRK ERTLPEPEPE PEPSEIPSSS ADDHHMSSSP STRPCFPPGV NYRPKDLEVI 60 SLLGRKQYYL GGNRELLATL SIHLVNIYES NPEELSEKFK KANDTDRFFI SKRNKMGKDG 120 KRQKRDAKGG YWKATVASKK IDAGQGLVGY KTALDYYVGK RPNGKKTSWL MHEYWIDQCP 180 SADDEVKDYS MCKIYRSPQA INKQKKEEEE ENKRQKKVVQ QQPPTVEYHQ PHVLLDSYQP 240 QPHHDIAYQQ QHLFQPAPLD SYQPQPHHDL AYQQQQQQFW SGPLDSYRTH QRQFWAARPD 300 SHQHYDSAYQ QFIKMLEGDN GGVQQQQPSF APPPPPPQGQ DSRTGMVMSQ EDGFFNPINE 360 LLNYDEEEHG VVTEKQQQEQ SAQILPPPPP SQGHQLQPYY DFAYQQRQQQ FLMTTTTPLE 420 KENVGATKHQ EEELSLPPPP PPPQGDQDSR SNMAMTRLIS NDNSTEEDLF DMSDEDRFFD 480 VDALFSNEEE EEDGVDTQQQ QQEQRTPILP HQQPDYCLLP AEHQKPQTQP FPYNFPELIS 540 FEQEPVIPED FEDFFADFIK PHSLNGDEDS SSYGLFEGFD TQGMIKDCTN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-17 | 35 | 203 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-17 | 35 | 203 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-17 | 35 | 203 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-17 | 35 | 203 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-17 | 38 | 196 | 12 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-17 | 35 | 203 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-17 | 35 | 203 | 3 | 171 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g068810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431402.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
STRING | XP_010431408.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 6e-58 | NAC domain containing protein 63 |