PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa09g068690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 230aa MW: 26177.7 Da PI: 5.535 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.4 | 9.6e-26 | 94 | 154 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK + s+fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+++H+++ Csa09g068690.1 94 DDNYTWRKYGQKGILCSTFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRSTHTCH 154 8****************************9999**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.79E-23 | 91 | 154 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-24 | 92 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-30 | 93 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.992 | 94 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-23 | 94 | 154 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MEEIMTMIFN GINLVKELEF SLSSQEPPES DLSNSLGLIS TLFGDANERL TILLAWRNSL 60 PQHEPVRMMD MMMQTEPALT QDHLLRGGWM FPPDDNYTWR KYGQKGILCS TFPRAYYRCT 120 HQKLYKCPAK KQVQRLDEDP YTFRVTYRST HTCHLFTTFP ISSAHTTTTT ANVPAVVNLA 180 EAMIRNMDSV VPLLGEPYFN HHCLVPGDDG DGDTWNSPSQ RYEMSSDPS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-19 | 94 | 153 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa09g068690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019085601.1 | 1e-166 | PREDICTED: WRKY transcription factor 55-like | ||||
Swissprot | Q9SHB5 | 4e-38 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | R0HL29 | 1e-116 | R0HL29_9BRAS; Uncharacterized protein | ||||
STRING | XP_010516245.1 | 1e-145 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40740.2 | 4e-44 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
---|---|---|---|
|