PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g067970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 355aa    MW: 40583.1 Da    PI: 10.073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g067970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.4e-1646142294
             NAM   2 ppGfrFhPtdeelvveyLkkk...vegkk.leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppGf F+P+d ++    L++k   + g++ +   +  i+ v+iy+++P +L  k+k+ +++ew+f sk++k  + gk+++r  k gyW+at  ++
  Csa09g067970.1  46 PPGFNFRPNDLDVF-LLLCRKrdyLGGNRdFL-VDLpIHLVNIYESNPGELTVKFKKgNDTEWFFISKKNKMGKGGKKQKRYDKGGYWHATVGSN 138
                     9***********99.56666624233333333.3555**************965555267799999999999999******99********9998 PP

             NAM  91 evls 94 
                     e+  
  Csa09g067970.1 139 EIDG 142
                     8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-1837163IPR003441NAC domain
PROSITE profilePS5100517.59845199IPR003441NAC domain
PfamPF023651.5E-546142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMSMPGRNKR KERSLPEAES EPSGNPSSSA DHSLSSPPPT RRFSFPPGFN FRPNDLDVFL  60
LLCRKRDYLG GNRDFLVDLP IHLVNIYESN PGELTVKFKK GNDTEWFFIS KKNKMGKGGK  120
KQKRYDKGGY WHATVGSNEI DGGQGLVVSA FCFCKDYSLC KIYRSTQAIN KQKKAEDEEN  180
EQQQPPTSDD ELTNGISQDE EESKETMKSS QKADRKKKKL KEKLLKEASK ADNRGVCYLS  240
RPEAQVHRKR AGGFRGQMFS EGWVEFAKKS VAKRVADMLN GEQIGGKKKS SIYYDIWNVK  300
YLTKFKWDDR TEEIAYKSAI REQKLNMVLS AAKREKNFYL SKIEKSRAMT EIDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g067970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2281911e-142AK228191.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-63-L15.
GenBankBT0107611e-142BT010761.1 Arabidopsis thaliana At3g56510 gene, complete cds.
GenBankBT0117911e-142BT011791.1 Arabidopsis thaliana At3g56510 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085598.11e-124PREDICTED: NAC domain-containing protein 86-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-24NAC domain containing protein 63