PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g058050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 310aa    MW: 34084.1 Da    PI: 6.0679
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g058050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-18219252134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +Cg+ kTp+WR gp g ktLCnaCG+++++ +
  Csa09g058050.1 219 CGHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGR 252
                     9******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-917309IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-13213267IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121213249IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13216276No hitNo description
Gene3DG3DSA:3.30.50.104.0E-14217250IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.31E-14218266No hitNo description
PfamPF003205.3E-16219252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESVVELALK NSSKTLTNSG ALNGDDFSVD DLLDFSNEDD EDALVEDETG LKKPQRKRGL  60
SSDETTLHLT NDFSAVDFPT TELAVPMDDL AELEWLSNFV DDSLTPYSSF APTKKPVWLT  120
GNRIRSVPPP VKEETCFKAP PPPVQIRPKR ARTGVTYWSH GSPASSSSSA SSSSSSSGLP  180
SSPLWLSGFE LDLLDEPRVK KQKKTKKLAD QTLMQTRRCG HCGVQKTPQW RAGPMGAKTL  240
CNACGVRFKS GRLFPEYRPA CSPTFSSELH SNNHRKVIEM RRKKETSQEE GDDDETTGLN  300
QTVQAIPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g058050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426650.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD381e-120GATA6_ARATH; GATA transcription factor 6
TrEMBLD7LTM81e-118D7LTM8_ARALL; GATA transcription factor
STRINGXP_010426650.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-103GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]