PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g053620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 544aa    MW: 61469 Da    PI: 5.0757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g053620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.71.7e-10219754322374
            GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiD 116
                     ++L +++e +s+ g+p++R+ +yf+eAL+++ ++         +p ++   + ++ + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+D
  Csa09g053620.1 197 ETLIQIRESVSELGNPVERVGFYFLEALSHKETE---------SPPSS---SLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSQNIHIVD 279
                     7899*************************99888.........33333...389***************************************** PP

            GRAS 117 fdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                     f+i qG+QW aLlqaLa+Rp+g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fefn+ v + ++ l+ +++rv+p+E+l+Vn++l
  Csa09g053620.1 280 FGIFQGIQWSALLQALATRPSGKPtRIRVSGIPAPSLGdsPEMSLIATGNRLRDFAAILDLNFEFNP-VLTPIQFLTGSSFRVEPDEVLVVNFML 373
                     ********************77776***********9988888999*********************.799************************ PP

            GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                     +l++llde++++     + L+l +sl+P++v++ e e+++n+ +F++r+ ++l++ysa+f+sle +l r+s+er  vEr+l+gr+i+++v + ++
  Csa09g053620.1 374 ELYKLLDETATSVG---TALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLERDSKERLRVERVLFGRRISDLVRTGND 465
                     ******99999999...9************************************************************************98766 PP

            GRAS 304 e.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +     r+  +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Csa09g053620.1 466 NnkpgtRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 543
                     4334448899*************************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.567151521IPR005202Transcription factor GRAS
PfamPF035145.8E-100197543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQEQEQE QEQQQQRQQH EQQTQSFGFT IPGSGFSDPF  60
QVTTDPVFHF PHLEHHHQNA VASDGLRFID GEFDSDEWME SLINGGDSLQ TNPDFPIYGH  120
DPFVTFPSRL NRVNKDDDSA TQQYSQPPAM CTPSPPSPPQ HHHHPPPPPP PQPDFDLNQP  180
ILKAIHDYAR KPETKPETLI QIRESVSELG NPVERVGFYF LEALSHKETE SPPSSSLEDF  240
ILSYKTLNDA CPYSKFAHLT ANQAILEATN QSQNIHIVDF GIFQGIQWSA LLQALATRPS  300
GKPTRIRVSG IPAPSLGDSP EMSLIATGNR LRDFAAILDL NFEFNPVLTP IQFLTGSSFR  360
VEPDEVLVVN FMLELYKLLD ETATSVGTAL RLARSLNPRI VTLGEYEVSL NRVEFANRVK  420
NSLRFYSAVF ESLEPNLERD SKERLRVERV LFGRRISDLV RTGNDNNKPG TRFGLMEEKE  480
QWRVLMEKAG FEPVKPSNYA VSQAKLLLWN YNYSTLYSLV ESEPGFISLA WNNVPLLTVS  540
SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1331785431375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g053620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426606.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FMQ80.0R0FMQ8_9BRAS; Uncharacterized protein
STRINGXP_010426606.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]