PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g048010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 515aa MW: 54912.5 Da PI: 7.2086 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.3 | 1.1e-41 | 117 | 296 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt Csa09g048010.1 117 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTgtipanftslnislrssgssmslpshfrsaa 211 57999***********************************************************6666666666666666666665555555555 PP TCP 66 .ssssaseceaesssssasnsssg.............kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134 ++s+++ +++++ ++++++++ g +a +s+ ++ ++ +++s+ln++++++++ ++++ e ++++k r+++ Csa09g048010.1 212 sTFSPNNIFSPAMLQQQQQQQRGGggggflhhphlqgRATTSSLfPGIDNFLPTTSFLNFHNQTKQEGDQDSDElSSEKKRRLQT 296 44444444455555555554444499999999999998888888899***************************66666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.6E-41 | 122 | 300 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.505 | 123 | 177 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MQKPTSSILN VIMDGGDNVG GGGDDHHRHL HHHHRPTFPF QLLGKRDPDD NHQQQQQQQP 60 SPSSSSSLFS LHQHQQLSQS QPQPQLQQKP QPQTTTQKEL SQTQEDSTAV VAAKKPPLKR 120 ASTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPSVIAATGT 180 GTIPANFTSL NISLRSSGSS MSLPSHFRSA ASTFSPNNIF SPAMLQQQQQ QQRGGGGGGF 240 LHHPHLQGRA TTSSLFPGID NFLPTTSFLN FHNQTKQEGD QDSDELSSEK KRRLQTTSDL 300 QLQQQHQHDQ IGSYTLQSSN SGSTATAAAA AAQQIPGNFW MVAAAAAAAG GGNNNQTGGL 360 MTASIGGSGG NGGGEPVWTF PSINTAAAAL YRSGVSGVSG GAVSSGLHFM NFTAPMAFLT 420 GQQQQQQLAT TSNHEINEDN NNNNNNEGGG GGGRSDGGGG DHHSTQRHHH HQQQQQQHHH 480 HNILSGLNQY GRQVSGESQA SGSLGGGDEE DPQD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 451 | 459 | GGRSDGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g048010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426208.1 | 0.0 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 0.0 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A1J3D566 | 0.0 | A0A1J3D566_NOCCA; Transcription factor TCP14 (Fragment) | ||||
STRING | XP_010426208.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 1e-163 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Publications ? help Back to Top | |||
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