PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g013080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 337aa    MW: 39650 Da    PI: 9.1468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g013080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM514.8e-161713010128
             NAM  10 tdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                      d+el++++L+  + ++   + ++++++vd+++ +P++       +++ ++ F+k++++ a gk      +sg W+  g+dk + s+ +g+  g 
  Csa09g013080.1  17 DDDELISYHLESMLIKNGnAKPNNFVQDVDVFNKNPREVF----DSKNPIFAFVKSRTE-ACGKTD--GCESGCWRIMGRDKLIRSEkTGKFLGF 104
                     599*********9766663555677**************5....245677778777665.444433..3579*************9866777*** PP

             NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                     k++L f ++r+ +  k +Wvm+eyrl
  Csa09g013080.1 105 KRILKFCEKRKLREYKRTWVMEEYRL 130
                     ************************98 PP
2NAM35.43.2e-1120930834128
             NAM  34 ikevdiykvePw...dLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgekt 119
                      ++ d+y veP+   +L+++++  +k+ +fF+kr k+     ++    + g W+  g+dk v+sk+g++ g+k+++ f          + + ++ 
  Csa09g013080.1 209 SSSNDVYCVEPSmhvSLDQSYEDLKKRRFFFVKRTKTCG---KTDG-CDGGCWRIMGRDKVVKSKEGKVLGIKRVFKFIetvqrrYVLQGQDVEV 299
                     356699999997222344455555667899999988764...3333.578*****************************5544321234445689 PP

             NAM 120 dWvmheyrl 128
                     +Wvm+eyrl
  Csa09g013080.1 300 TWVMEEYRL 308
                     9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1888149IPR003441NAC domain
PfamPF023656.7E-1017130IPR003441NAC domain
SuperFamilySSF1019417.85E-2417147IPR003441NAC domain
PROSITE profilePS5100518.12171324IPR003441NAC domain
PfamPF023654.1E-7204308IPR003441NAC domain
SuperFamilySSF1019416.02E-18210322IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMEMEIDNDV LYVHDEDDDE LISYHLESML IKNGNAKPNN FVQDVDVFNK NPREVFDSKN  60
PIFAFVKSRT EACGKTDGCE SGCWRIMGRD KLIRSEKTGK FLGFKRILKF CEKRKLREYK  120
RTWVMEEYRL VNRGKRDDEA AVICKIRLMF ETKITFLLAK HFSYLFTSQS LPLHARISFS  180
DYGIGLPYSS PEDLSYLQML IDKEGNIWSS SNDVYCVEPS MHVSLDQSYE DLKKRRFFFV  240
KRTKTCGKTD GCDGGCWRIM GRDKVVKSKE GKVLGIKRVF KFIETVQRRY VLQGQDVEVT  300
WVMEEYRLTK KKKQDEVICV IKLLFPYLLN HLLRRW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g013080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425463.10.0PREDICTED: uncharacterized protein LOC104710543
TrEMBLR0GIC31e-103R0GIC3_9BRAS; Uncharacterized protein
STRINGXP_010425463.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.12e-93NAC family protein