PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g009740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 719aa    MW: 82255.6 Da    PI: 6.8488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g009740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind63.84.2e-20661718158
                     HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHH CS
    HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLn 58 
                     +F  k+ye+++d++ ++++sws++++sf+v+++ ef+++ L ++Fkh+nf+SF+RQLn
  Csa09g009740.1 661 TFSYKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDRLLRFFKHNNFSSFIRQLN 718
                     5899*****************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.630.103.1E-12428494IPR001128Cytochrome P450
PfamPF000671.6E-10034484IPR001128Cytochrome P450
SuperFamilySSF482641.01E-11634484IPR001128Cytochrome P450
PRINTSPR004631.2E-446180IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.2E-4485106IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.2E-44179197IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.2E-44295312IPR002401Cytochrome P450, E-class, group I
PRINTSPR003856.2E-10306323IPR001128Cytochrome P450
PRINTSPR004631.2E-44315341IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.2E-44360378IPR002401Cytochrome P450, E-class, group I
PRINTSPR003856.2E-10361372IPR001128Cytochrome P450
PRINTSPR004631.2E-44401425IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.2E-44437447IPR002401Cytochrome P450, E-class, group I
PRINTSPR003856.2E-10438447IPR001128Cytochrome P450
PROSITE patternPS000860440449IPR017972Cytochrome P450, conserved site
PRINTSPR004631.2E-44447470IPR002401Cytochrome P450, E-class, group I
SMARTSM004159.8E-12658719IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-20659718IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-19660718IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-15662718IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-10662685IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-10700712IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-10713719IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MTIVLSYFLL IFVPIFLYLI LTKKNIKESK QNLPPGPRKL PIIGNLHQLQ GLVHRCLHDL  60
SKKHGPVMHF RLGFVPMVVI SSSEAAEEAL KTHDLECCTR PITVASKVFS RNGKDIGFGV  120
YGDEWRELRK LSVREFFSVK KVQSFRYVRE EESDLMVKKL RESALKHSPV DLSKTLFFLA  180
ASIIFRTAFG QSFLENKHID KETIKELMFE AHKNMSFTLS DIFPIAGLGW FIELVSGQHK  240
RLHNVFTEVD TFLNHITDDH RLQISTQDRA DIIDSLLDMV HKQEHDVSFK LTIDHLKGII  300
QNIYLAGVDT SAVTMIWAMA ELVRNPRVMK KAQDEIQTCI GFKQEERIVE EDLCKLQYLK  360
LVVKETLRLH PPAPLLLPRE TMSHIKIQGY DIPPKTLLLV NAWSIGGDPK NWQNPEEFNP  420
ERFMDCSVDY KGQSFEMLPF GSGRRICPGI ASGIATVELG LLNLLYFFNW RMTDEKNDMD  480
MEEAGDVTVD KKFTVGLKYA ICYVVNETRS GEQACTTYVM FRDSYSQETA VLLSGATILD  540
QRVCITRWGQ HHEEFDFWNA TPRGFEDESY SNPHAQPGEF NAGEAVTKDQ EVVKTMLATG  600
FVLGKDALSK GKTFDDSHGV SVVAMARVSQ LEQMIGLTDK IFTGLEAVRM TDQKFIKLTP  660
TFSYKTYEMV DDSSSDSIVS WSQSNKSFIV WNPPEFSRDR LLRFFKHNNF SSFIRQLNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A2e-803050125485Ferruginol synthase
5ym3_A2e-803050125485Ferruginol synthase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g009740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425327.10.0PREDICTED: cytochrome P450 71B4-like
SwissprotO657860.0C71B4_ARATH; Cytochrome P450 71B4
TrEMBLA0A178VFB60.0A0A178VFB6_ARATH; CYP71B4
STRINGXP_010425327.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-17heat shock transcription factor A4A
Publications ? help Back to Top
  1. Duan H,Huang MY,Palacio K,Schuler MA
    Variations in CYP74B2 (hydroperoxide lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of Arabidopsis.
    Plant Physiol., 2005. 139(3): p. 1529-44
    [PMID:16258015]