PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g002740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 263aa    MW: 30097 Da    PI: 5.8799
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g002740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-2152110356
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                     +R+++t+eq+++Lee++++ +r+p++e+++++A+kl    +++ ++V++WFqN++a+e+
  Csa09g002740.1  52 SRWNPTPEQITTLEEVYRSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARER 110
                     7*****************99*************************************98 PP
2Wus_type_Homeobox113.21.3e-3650112264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+PtpeQi+ Lee+y+sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRer k
     Csa09g002740.1  50 TTSRWNPTPEQITTLEEVYRSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARERLK 112
                        679**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.30547112IPR001356Homeobox domain
SMARTSM003891.8E-649116IPR001356Homeobox domain
SuperFamilySSF466892.44E-1251111IPR009057Homeodomain-like
PfamPF000464.1E-1952110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-852110IPR009057Homeodomain-like
CDDcd000862.27E-653110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGYVSDNNLV NYFPLSTNTT TQPHHLLITH CEINGNDHDD GRSNISVAAT TSRWNPTPEQ  60
ITTLEEVYRS GTRTPTTEQI QKIASKLRKY GRIEGKNVFY WFQNHKARER LKRRRCEEVA  120
TDNVREPHQD VEDSSSGGYR VDRTKSCLSF PQTDPQPQHE LVPASYNKDD NANNGDHGRT  180
EESERVSEGG KDITWRNLVT SSSVTQEEPG GEVETREIRT LNLFPVLENQ EKTSWFEEKK  240
NANASQACCN YCFYYEFLPL KN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g002740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546045e-97AC254604.1 Capsella rubella clone CAP23-D18, complete sequence.
GenBankAC2546075e-97AC254607.1 Capsella rubella clone CAP08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424922.10.0PREDICTED: WUSCHEL-related homeobox 6-like
SwissprotQ9ZVF51e-109WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLR0HMG91e-131R0HMG9_9BRAS; Uncharacterized protein
STRINGXP_010424922.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-111WOX family protein