PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g062990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 926aa    MW: 103084 Da    PI: 9.3249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g062990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-085292954
                    HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++++P  a      K++ +++L +A++Y+k L
  Csa08g062990.1 52 ARERRHRISDRFKVLQSMVPGgA------KMDTVSMLDEAIRYVKFL 92
                    699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1484392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1248106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-104996No hitNo description
Gene3DG3DSA:4.10.280.103.9E-114996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-65392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525407.04E-16237385IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136712.9E-13244369No hitNo description
Gene3DG3DSA:3.40.50.3002.7E-19244378IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF529493.73E-18516655No hitNo description
PROSITE profilePS5115412.514522701IPR002589Macro domain
Gene3DG3DSA:3.40.220.107.9E-16524651No hitNo description
SMARTSM005064.3E-5534669IPR002589Macro domain
PfamPF016611.6E-6557641IPR002589Macro domain
SuperFamilySSF541974.59E-40709887IPR011146HIT-like domain
PROSITE profilePS510849.484731840IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.104.1E-13732837IPR011146HIT-like domain
PfamPF119692.8E-26734844No hitNo description
PROSITE patternPS008920813831IPR019808Histidine triad, conserved site
PfamPF162781.9E-9849903IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MDHSNLRSQH PNSSSTTSSS SSPFHGHKSD TGNTKRSRST STLSTDPQSV AARERRHRIS  60
DRFKVLQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NMLVFLNDHE TTSSCTYSPA  120
TGEYEPTLFG YDEDCTHVNE TYSQGMPLTV MDSEYSPWLG PVDYEQEQTP RIPNTLRRGS  180
AAIVKSEKLF LRSTRELRNC KWKTLVKIKP FLNLFLLLTA LLFILMSFTA IMAKIEAEKT  240
NQIVVLLIGP PGSGKSTFCD TVMRSSLRPW SRVCQDIINN GKAGTKAQCL KMATSSLKEG  300
KSVFIDRCNL DREQRSEFVK LGGPGIEVHA VVLELPAQVC ISRSVKRTGH EGNLQGGRAA  360
AVVNRMLQSK ELPKVNEGFS RVMFCYNDAD VENAVNTYSK LGPMDTLPSG CFGEKKSDTK  420
SQPGIMKFFK KVNALPGSSS SNEGTNAMRK ANEKTENFRL GSADIVHTLA FPSVSTADFQ  480
FDLEKASDII VEKAEEFLPK VGTARLVLVD LSHGSKILSL VKAKASQKNI DSERFFTFVG  540
DITKLRSEGG LHCNVIANAT NWRLKPGGGG VNAAIFKAAG PDLETATRVR ANTLLPGKAV  600
VVPLPSTCPL LNAEGITHVI HVLGPNMNPN RPDNLSNDYT KGCKTLREAY TSLFEGFLSV  660
VQDQSKFPKR SNQTAVSDSG EHIKEDSERN KKYKGSQDKA VTNNMESGSL EDTRDSGKKM  720
SKEWSTWALA LHTIAMHPER HENVVLEFSD NIVVINDQYP KARKHVLVLA RQESLDGLED  780
VRKENLQLLQ EMHNVGLKWV DRFQNEDASL IFRLGYHSVP SMRQLHLHVI SQDFDSDSLK  840
NKKHWNSFTS SFFRDSVDVL EEVKSQGKAN VASEDLLKGE LRCNRCRSAH PNIPKLKSHV  900
RSCRSQFPEH VLQNSRLVAR PETKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A8e-9346866237231Basic helix-loop-helix, putative, expressed
5lw0_B8e-9346866237231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g062990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1617460.0AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGXP_010423944.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]