PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g060080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 398aa    MW: 45227.1 Da    PI: 8.0032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g060080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49281591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeel+++yLk+kv+gk+++l ++i evd yk+ePw+Lp+  k+k+++kewyfFs+ dkky+tg+  +r+tk+gyW++tgkdke+ 
  Csa08g060080.1  28 LAPGFRFHPTDEELITYYLKRKVQGKPMRL-DAIGEVDFYKHEPWNLPEhsKLKTRDKEWYFFSTLDKKYSTGTCVKRVTKQGYWNTTGKDKEIR 121
                     579***************************.99**************9435889999************************************** PP

             NAM  94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                     + +ge+   +g+ k+ vfykgr+p+g++t+Wvmheyrl
  Csa08g060080.1 122 RGDGEVsiaIGMMKIHVFYKGRSPNGRRTNWVMHEYRL 159
                     986655677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5423179IPR003441NAC domain
PROSITE profilePS5100553.98528179IPR003441NAC domain
PfamPF023651.5E-2530159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDRDSKKPGR ALPAPREVQV NAAAVTSLAP GFRFHPTDEE LITYYLKRKV QGKPMRLDAI  60
GEVDFYKHEP WNLPEHSKLK TRDKEWYFFS TLDKKYSTGT CVKRVTKQGY WNTTGKDKEI  120
RRGDGEVSIA IGMMKIHVFY KGRSPNGRRT NWVMHEYRLS KNDEGLQVDA YVLCKVFRKQ  180
NPGEPNESRY APFVEQEWDD DGERAVSHVP VVVDANRVNE TQQIDGNNKE HDDQALKRAP  240
ILPHCDIDKE APLPLCVLNK QAPLTLVQHK RKRRVDSSGN SNSSSQMTQD HSSSTATIVD  300
TGAAEPEPLT NSEQTSVLKS RLGSMILDLG NKQEEAVAEK VPATTSSLTK SIQDLMNEKD  360
EMVVLRETQM RETIEAEILI NYLEDQIKTL RKEKMRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-422718119170NAC domain-containing protein 19
3swm_B2e-422718119170NAC domain-containing protein 19
3swm_C2e-422718119170NAC domain-containing protein 19
3swm_D2e-422718119170NAC domain-containing protein 19
3swp_A2e-422718119170NAC domain-containing protein 19
3swp_B2e-422718119170NAC domain-containing protein 19
3swp_C2e-422718119170NAC domain-containing protein 19
3swp_D2e-422718119170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g060080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424782.20.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A398AT041e-100A0A398AT04_BRACM; Uncharacterized protein
STRINGXP_010495071.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2022046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.14e-99NAC domain containing protein 77